RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SESN1Q9Y6P5 492 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 GUCY2DQ02846 1103 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 FSCBQ5H9T9 825 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 KIF2CQ99661 725 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 VWA3AA6NCI4 1184 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 KCNK3O14649 394 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 DEFA1P59665 94 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 DEFA3P59666 94 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 MDM2Q00987 491 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-206ENST00000409809 VPS16Q9H269 839 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 KRT10P13645 584 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 PDE4DQ08499 809 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 PDP2Q9P2J9 529 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 SYCP2Q9BX26 1530 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 P4HA1P13674 534 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 ATP6V1E1P36543 226 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 CACTINQ8WUQ7 758 aaKnown RBP14.05□□□□□ -0.16
COL6A3-206ENST00000409809 TMEM63CQ9P1W3 806 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 PLB1Q6P1J6 1458 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 PROSER2Q86WR7 435 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-206ENST00000409809 DNAJC17Q9NVM6 304 aaKnown RBP14.05□□□□□ -0.16
COL6A3-206ENST00000409809 LRRIQ3A6PVS8 624 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-206ENST00000409809 RNF113AO15541 343 aaKnown RBP14.05□□□□□ -0.16
COL6A3-206ENST00000409809 ZNF189O75820 626 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-206ENST00000409809 ABCD1P33897 745 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 SKOR1P84550 965 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 LRRC37BQ96QE4 947 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 MTRQ99707 1265 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 GID8Q9NWU2 228 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 CCDC188H7C350 402 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 HORMAD1Q86X24 394 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 KIRREL3Q8IZU9 778 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 FNBP1Q96RU3 617 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 TRPC1P48995 793 aa14.05□□□□□ -0.16
COL6A3-206ENST00000409809 METTL14Q9HCE5 456 aaKnown RBP14.05□□□□□ -0.16
COL6A3-206ENST00000409809 NSFP46459 744 aaKnown RBP14.04□□□□□ -0.16
COL6A3-206ENST00000409809 GIPC2Q8TF65 315 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 ANKIB1Q9P2G1 1089 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 DAB1O75553 588 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 MRPL28Q13084 256 aaKnown RBP14.04□□□□□ -0.16
COL6A3-206ENST00000409809 KPNB1Q14974 876 aaKnown RBP14.04□□□□□ -0.16
COL6A3-206ENST00000409809 TEX12Q9BXU0 123 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 PYGLP06737 847 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 RASA3Q14644 834 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 RRS1Q15050 365 aaKnown RBP14.04□□□□□ -0.16
COL6A3-206ENST00000409809 OR9Q1Q8NGQ5 310 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 SRLQ86TD4 932 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 ESRRAP11474 423 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-206ENST00000409809 ARHGDIAP52565 204 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 GNPTABQ3T906 1256 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 EP400NLQ6ZTU2 488 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 SH3GL2Q99962 352 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 KCNJ6P48051 423 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 HOOK2Q96ED9 719 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 TTC25Q96NG3 672 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 STX8Q9UNK0 236 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 CCND1P24385 295 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 CASC4Q6P4E1 433 aa14.04□□□□□ -0.16
COL6A3-206ENST00000409809 C17orf53Q8N3J3 647 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-206ENST00000409809 ESCO1Q5FWF5 840 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 ZNF354CQ86Y25 554 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 OSBPL1AQ9BXW6 950 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 ANKFY1Q9P2R3 1169 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 CCDC78A2IDD5 438 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 PODXLO00592 558 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 SCG2P13521 617 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 FBXO38Q6PIJ6 1188 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 MBIPQ9NS73 344 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 RAB20Q9NX57 234 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 BLOC1S6Q9UL45 172 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 LCA5Q86VQ0 697 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 AFAP1Q8N556 730 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 TRIM63Q969Q1 353 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 H0YCG3 227 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 CEP55Q53EZ4 464 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 GALNT17Q6IS24 598 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.03□□□□□ -0.16
COL6A3-206ENST00000409809 GYG2O15488 501 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 RBM42Q9BTD8 480 aaKnown RBP14.03□□□□□ -0.16
COL6A3-206ENST00000409809 BABAM1Q9NWV8 329 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 H0Y626 953 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 GRM8O00222 908 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 TRIM16O95361 564 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 SPATA1Q5VX52 437 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 RAB44Q7Z6P3 723 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-206ENST00000409809 ZNF148Q9UQR1 794 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 IFT122Q9HBG6 1241 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 AFG3L2Q9Y4W6 797 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 MAPKBP1O60336 1514 aa14.03□□□□□ -0.16
COL6A3-206ENST00000409809 BASP1P80723 227 aaKnown RBP14.02□□□□□ -0.16
COL6A3-206ENST00000409809 RINT1Q6NUQ1 792 aa14.02□□□□□ -0.16
COL6A3-206ENST00000409809 TUBA8Q9NY65 449 aaPredicted RBP14.02□□□□□ -0.16
COL6A3-206ENST00000409809 CMA1P23946 247 aa14.02□□□□□ -0.16
COL6A3-206ENST00000409809 HSPA9P38646 679 aaKnown RBP14.02□□□□□ -0.16
COL6A3-206ENST00000409809 SPARCL1Q14515 664 aa14.02□□□□□ -0.16
COL6A3-206ENST00000409809 TYW1BQ6NUM6 668 aa14.02□□□□□ -0.16
COL6A3-206ENST00000409809 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.02□□□□□ -0.16
COL6A3-206ENST00000409809 MAP3K2Q9Y2U5 619 aa14.02□□□□□ -0.16
COL6A3-206ENST00000409809 SNX5Q9Y5X3 404 aa14.02□□□□□ -0.16
COL6A3-206ENST00000409809 SYCE1LA8MT33 242 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms