RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ARMCX5Q6P1M9 558 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 OTUD6BQ8N6M0 293 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 SENP6Q9GZR1 1112 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-202ENST00000409435 URI1O94763 535 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-202ENST00000409435 LRRC24Q50LG9 513 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 CEP128Q6ZU80 1094 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 ATP6V0A1Q93050 837 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 PQBP1O60828 265 aaKnown RBP8.12□□□□□ -1.11
SCN9A-202ENST00000409435 CAMTA2O94983 1202 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 HSPA1AP0DMV8 641 aaKnown RBP8.12□□□□□ -1.11
SCN9A-202ENST00000409435 HSPA1BP0DMV9 641 aaKnown RBP8.12□□□□□ -1.11
SCN9A-202ENST00000409435 PHKA1P46020 1223 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 NMIQ13287 307 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-202ENST00000409435 WHAMMP3Q1A5X7 153 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 RPAINQ86UA6 219 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 PGBD3Q8N328 593 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 LMCD1Q9NZU5 365 aa8.12□□□□□ -1.11
SCN9A-202ENST00000409435 CCDC83Q8IWF9 413 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 C7orf61Q8IZ16 206 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 ANKS4BQ8N8V4 417 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 ZNF397Q8NF99 534 aaPredicted RBP8.11□□□□□ -1.11
SCN9A-202ENST00000409435 WHAMMQ8TF30 809 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 ALS2CR12Q96Q35 445 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 RAVER2Q9HCJ3 691 aaKnown RBP8.11□□□□□ -1.11
SCN9A-202ENST00000409435 H0YCG3 227 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 ANXA13P27216 316 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 IFRD2Q12894 506 aaPredicted RBP8.11□□□□□ -1.11
SCN9A-202ENST00000409435 XKR9Q5GH70 373 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 CCDC50Q8IVM0 306 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 SDR42E1Q8WUS8 393 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 B4E1Z4 1266 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 CTNND1O60716 968 aaKnown RBP8.11□□□□□ -1.11
SCN9A-202ENST00000409435 SRGNP10124 158 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 SPECC1Q5M775 1068 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 CACNA2D4Q7Z3S7 1137 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 PLA2G4DQ86XP0 818 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 STIM2Q9P246 746 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 SEPT9Q9UHD8 586 aaPredicted RBP8.11□□□□□ -1.11
SCN9A-202ENST00000409435 CASQ2O14958 399 aaPredicted RBP8.11□□□□□ -1.11
SCN9A-202ENST00000409435 FARP2O94887 1054 aaPredicted RBP8.11□□□□□ -1.11
SCN9A-202ENST00000409435 STAT6P42226 847 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 KRT85P78386 507 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 PTPROQ16827 1216 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 FAM102BQ5T8I3 360 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 ZC4H2Q9NQZ6 224 aa8.11□□□□□ -1.11
SCN9A-202ENST00000409435 KDM5AP29375 1690 aaKnown RBP8.11□□□□□ -1.11
SCN9A-202ENST00000409435 WDR33Q9C0J8 1336 aaKnown RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 NEMFO60524 1076 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 ZNF365Q70YC5 407 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 KCTD1Q719H9 257 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 FAM151AQ8WW52 585 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 SH2B1Q9NRF2 756 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 ANAPC4Q9UJX5 808 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 DISP2A7MBM2 1401 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 TNS2Q63HR2 1409 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 ATP8B3O60423 1300 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 SMTNL1A8MU46 457 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 FOSP01100 380 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 CCDC172P0C7W6 258 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 XPAP23025 273 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 FAM83BQ5T0W9 1011 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 KCNV1Q6PIU1 500 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 THNSL1Q8IYQ7 743 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 TBC1D5Q92609 795 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 OSBPL5Q9H0X9 879 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 KIF9Q9HAQ2 790 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 RNF146Q9NTX7 359 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 SEPT10Q9P0V9 454 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 PAXBP1Q9Y5B6 917 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 NRXN1Q9ULB1 1477 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 CCNT1O60563 726 aaKnown RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 ATP2C2O75185 946 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 MECOMQ03112 1051 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 TBC1D8BQ0IIM8 1120 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 PDE1CQ14123 709 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 ASPRV1Q53RT3 343 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 SCYL3Q8IZE3 742 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 TTLL11Q8NHH1 800 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 NSMCE1Q8WV22 266 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 DPF2Q92785 391 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 VCXQ9H320 206 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 ENTPD7Q9NQZ7 604 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 GCKP35557 465 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 PRMT2P55345 433 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 TSHZ3Q63HK5 1081 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 SLC7A3Q8WY07 619 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 TMEM87BQ96K49 555 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 NAA15Q9BXJ9 866 aaKnown RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 TAF1DQ9H5J8 278 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 PCDHB7Q9Y5E2 793 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 POLRMTO00411 1230 aaKnown RBP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 OATP04181 439 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 SFPQP23246 707 aaKnown RBP eCLIP8.1□□□□□ -1.11
SCN9A-202ENST00000409435 MARK3P27448 753 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 NEDD9Q14511 834 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 SETDB1Q15047 1291 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 HAUS6Q7Z4H7 955 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 DPP7Q9UHL4 492 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 SERPINA10Q9UK55 444 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 RIPOR2Q9Y4F9 1068 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms