RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TRIB2Q92519 343 aa25.36■■□□□ 1.65
CLN3-207ENST00000395653 MMP19Q99542 508 aa25.36■■□□□ 1.65
CLN3-207ENST00000395653 INHAP05111 366 aa25.35■■□□□ 1.65
CLN3-207ENST00000395653 SLC4A3P48751 1232 aa25.35■■□□□ 1.65
CLN3-207ENST00000395653 SNAP25P60880 206 aa25.35■■□□□ 1.65
CLN3-207ENST00000395653 GRM4Q14833 912 aa25.35■■□□□ 1.65
CLN3-207ENST00000395653 DHX32Q7L7V1 743 aaKnown RBP25.35■■□□□ 1.65
CLN3-207ENST00000395653 AGBL1Q96MI9 1066 aa25.35■■□□□ 1.65
CLN3-207ENST00000395653 GPHNQ9NQX3 736 aaPredicted RBP25.35■■□□□ 1.65
CLN3-207ENST00000395653 SLC5A4Q9NY91 659 aa25.35■■□□□ 1.65
CLN3-207ENST00000395653 PNMA2Q9UL42 364 aa25.35■■□□□ 1.65
CLN3-207ENST00000395653 PALM3A6NDB9 673 aaPredicted RBP25.34■■□□□ 1.65
CLN3-207ENST00000395653 EIF5BO60841 1220 aaKnown RBP25.34■■□□□ 1.65
CLN3-207ENST00000395653 EXOSC10Q01780 885 aaKnown RBP25.34■■□□□ 1.65
CLN3-207ENST00000395653 UBA5Q9GZZ9 404 aa25.34■■□□□ 1.65
CLN3-207ENST00000395653 MAD2L2Q9UI95 211 aa25.34■■□□□ 1.65
CLN3-207ENST00000395653 COBLO75128 1261 aa25.33■■□□□ 1.65
CLN3-207ENST00000395653 DDAH1O94760 285 aa25.33■■□□□ 1.65
CLN3-207ENST00000395653 CCL14Q16627 93 aa25.33■■□□□ 1.65
CLN3-207ENST00000395653 ZNF654Q8IZM8 581 aa25.33■■□□□ 1.65
CLN3-207ENST00000395653 NPLOC4Q8TAT6 608 aa25.33■■□□□ 1.65
CLN3-207ENST00000395653 MAP3K14Q99558 947 aa25.33■■□□□ 1.65
CLN3-207ENST00000395653 CPVLQ9H3G5 476 aa25.33■■□□□ 1.65
CLN3-207ENST00000395653 ACAD9Q9H845 621 aa25.33■■□□□ 1.65
CLN3-207ENST00000395653 CCPG1Q9ULG6 757 aa25.33■■□□□ 1.65
CLN3-207ENST00000395653 CCDC69A6NI79 296 aa25.32■■□□□ 1.64
CLN3-207ENST00000395653 MTFR1Q15390 333 aa25.32■■□□□ 1.64
CLN3-207ENST00000395653 NFXL1Q6ZNB6 911 aa25.32■■□□□ 1.64
CLN3-207ENST00000395653 SGMS1Q86VZ5 419 aa25.32■■□□□ 1.64
CLN3-207ENST00000395653 ADGRF4Q8IZF3 695 aa25.32■■□□□ 1.64
CLN3-207ENST00000395653 STAG2Q8N3U4 1231 aa25.32■■□□□ 1.64
CLN3-207ENST00000395653 TMEM106CQ9BVX2 250 aa25.32■■□□□ 1.64
CLN3-207ENST00000395653 LRRC2Q9BYS8 371 aa25.32■■□□□ 1.64
CLN3-207ENST00000395653 RNF146Q9NTX7 359 aa25.32■■□□□ 1.64
CLN3-207ENST00000395653 KLRF2D3W0D1 207 aa25.31■■□□□ 1.64
CLN3-207ENST00000395653 ALAS1P13196 640 aa25.31■■□□□ 1.64
CLN3-207ENST00000395653 SOX10P56693 466 aa25.31■■□□□ 1.64
CLN3-207ENST00000395653 JAKMIP1Q96N16 626 aaKnown RBP25.31■■□□□ 1.64
CLN3-207ENST00000395653 TRERF1Q96PN7 1200 aa25.31■■□□□ 1.64
CLN3-207ENST00000395653 HOMER2Q9NSB8 354 aa25.31■■□□□ 1.64
CLN3-207ENST00000395653 RBBP6Q7Z6E9 1792 aaKnown RBP25.31■■□□□ 1.64
CLN3-207ENST00000395653 MYCP01106 439 aaPredicted RBP25.3■■□□□ 1.64
CLN3-207ENST00000395653 CCL5P13501 91 aa25.3■■□□□ 1.64
CLN3-207ENST00000395653 PSMA5P28066 241 aa25.3■■□□□ 1.64
CLN3-207ENST00000395653 MAP3K21Q5TCX8 1036 aa25.3■■□□□ 1.64
CLN3-207ENST00000395653 OLFML2BQ68BL8 750 aa25.3■■□□□ 1.64
CLN3-207ENST00000395653 DIS3Q9Y2L1 958 aaKnown RBP25.3■■□□□ 1.64
CLN3-207ENST00000395653 DHX16O60231 1041 aaKnown RBP25.29■■□□□ 1.64
CLN3-207ENST00000395653 IGHA2P01877 340 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 PGK2P07205 417 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 TRIM32Q13049 653 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 CDC37Q16543 378 aaPredicted RBP25.29■■□□□ 1.64
CLN3-207ENST00000395653 BLOC1S2Q6QNY1 142 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 ANKRD35Q8N283 1001 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 NUP133Q8WUM0 1156 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 DDX11Q96FC9 970 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 JMJD4Q9H9V9 463 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 FLRT1Q9NZU1 646 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 DNAJC25-GNG10A0A024R161 153 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 CALM1P0DP23 149 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 CALM2P0DP24 149 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 CALM3P0DP25 149 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 ZNF792Q3KQV3 632 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 MFSD14CQ5VZR4 134 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 CTCFLQ8NI51 663 aaPredicted RBP25.29■■□□□ 1.64
CLN3-207ENST00000395653 MAML3Q96JK9 1138 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 TCEANC2Q96MN5 208 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 MYL10Q9BUA6 226 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 UNC93B1Q9H1C4 597 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 SLC12A7Q9Y666 1083 aa25.29■■□□□ 1.64
CLN3-207ENST00000395653 RPTORQ8N122 1335 aa25.28■■□□□ 1.64
CLN3-207ENST00000395653 PRKAR2AP13861 404 aaKnown RBP25.28■■□□□ 1.64
CLN3-207ENST00000395653 KIF5BP33176 963 aa25.28■■□□□ 1.64
CLN3-207ENST00000395653 RNF208Q9H0X6 261 aa25.28■■□□□ 1.64
CLN3-207ENST00000395653 ZNFX1Q9P2E3 1918 aaKnown RBP25.28■■□□□ 1.64
CLN3-207ENST00000395653 BRCA2P51587 3418 aa25.27■■□□□ 1.64
CLN3-207ENST00000395653 GJB1P08034 283 aa25.27■■□□□ 1.64
CLN3-207ENST00000395653 CACNB2Q08289 660 aaPredicted RBP25.27■■□□□ 1.64
CLN3-207ENST00000395653 MUM1L1Q5H9M0 696 aa25.27■■□□□ 1.64
CLN3-207ENST00000395653 MTMR8Q96EF0 704 aa25.27■■□□□ 1.64
CLN3-207ENST00000395653 RIOX1Q9H6W3 641 aa25.27■■□□□ 1.64
CLN3-207ENST00000395653 VAT1LQ9HCJ6 419 aa25.27■■□□□ 1.64
CLN3-207ENST00000395653 HMX1Q9NP08 348 aaPredicted RBP25.27■■□□□ 1.64
CLN3-207ENST00000395653 A1CFQ9NQ94 594 aaKnown RBP25.27■■□□□ 1.64
CLN3-207ENST00000395653 PFASO15067 1338 aa25.26■■□□□ 1.63
CLN3-207ENST00000395653 POTEFA5A3E0 1075 aa25.26■■□□□ 1.63
CLN3-207ENST00000395653 TAL1P17542 331 aaPredicted RBP25.26■■□□□ 1.63
CLN3-207ENST00000395653 CASTP20810 708 aaKnown RBP25.26■■□□□ 1.63
CLN3-207ENST00000395653 RPS6KB1P23443 525 aa25.26■■□□□ 1.63
CLN3-207ENST00000395653 QRICH1Q2TAL8 776 aa25.26■■□□□ 1.63
CLN3-207ENST00000395653 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.26■■□□□ 1.63
CLN3-207ENST00000395653 PAK6Q9NQU5 681 aaPredicted RBP25.26■■□□□ 1.63
CLN3-207ENST00000395653 CPA1P15085 419 aa25.25■■□□□ 1.63
CLN3-207ENST00000395653 APOA5Q6Q788 366 aa25.25■■□□□ 1.63
CLN3-207ENST00000395653 SYNE3Q6ZMZ3 975 aa25.25■■□□□ 1.63
CLN3-207ENST00000395653 FBXL16Q8N461 479 aa25.25■■□□□ 1.63
CLN3-207ENST00000395653 LZTS2Q9BRK4 669 aa25.25■■□□□ 1.63
CLN3-207ENST00000395653 TM6SF1Q9BZW5 370 aa25.25■■□□□ 1.63
CLN3-207ENST00000395653 PLXNA1Q9UIW2 1896 aa25.25■■□□□ 1.63
CLN3-207ENST00000395653 KIAA0100Q14667 2235 aaKnown RBP25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms