RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 HSPD1P10809 573 aaKnown RBP19.64■□□□□ 0.73
PTPRK-208ENST00000392449 AKR1A1P14550 325 aa19.64■□□□□ 0.73
PTPRK-208ENST00000392449 CNTN2Q02246 1040 aa19.64■□□□□ 0.73
PTPRK-208ENST00000392449 SNX17Q15036 470 aa19.64■□□□□ 0.73
PTPRK-208ENST00000392449 CCDC174Q6PII3 467 aa19.64■□□□□ 0.73
PTPRK-208ENST00000392449 SH3RF1Q7Z6J0 888 aa19.64■□□□□ 0.73
PTPRK-208ENST00000392449 LBHD1Q9BQE6 289 aaPredicted RBP19.64■□□□□ 0.73
PTPRK-208ENST00000392449 PHF24Q9UPV7 400 aa19.64■□□□□ 0.73
PTPRK-208ENST00000392449 DDX49Q9Y6V7 483 aaKnown RBP19.64■□□□□ 0.73
PTPRK-208ENST00000392449 SYNGAP1Q96PV0 1343 aa19.64■□□□□ 0.73
PTPRK-208ENST00000392449 MYADML2A6NDP7 307 aa19.63■□□□□ 0.73
PTPRK-208ENST00000392449 ADAMTS4O75173 837 aa19.63■□□□□ 0.73
PTPRK-208ENST00000392449 OAZ1P54368 228 aa19.63■□□□□ 0.73
PTPRK-208ENST00000392449 ALX1Q15699 326 aa19.63■□□□□ 0.73
PTPRK-208ENST00000392449 LRIT3Q3SXY7 679 aa19.63■□□□□ 0.73
PTPRK-208ENST00000392449 MAMDC4Q6UXC1 1216 aa19.63■□□□□ 0.73
PTPRK-208ENST00000392449 STAG1Q8WVM7 1258 aa19.63■□□□□ 0.73
PTPRK-208ENST00000392449 SYNRGQ9UMZ2 1314 aa19.63■□□□□ 0.73
PTPRK-208ENST00000392449 ORC4O43929 436 aa19.62■□□□□ 0.73
PTPRK-208ENST00000392449 RNF180Q86T96 592 aa19.62■□□□□ 0.73
PTPRK-208ENST00000392449 FAM160B2Q86V87 743 aa19.62■□□□□ 0.73
PTPRK-208ENST00000392449 PLEKHM2Q8IWE5 1019 aa19.62■□□□□ 0.73
PTPRK-208ENST00000392449 CHST13Q8NET6 341 aa19.62■□□□□ 0.73
PTPRK-208ENST00000392449 RWDD1Q9H446 243 aaPredicted RBP19.62■□□□□ 0.73
PTPRK-208ENST00000392449 PDLIM7Q9NR12 457 aa19.62■□□□□ 0.73
PTPRK-208ENST00000392449 RNF146Q9NTX7 359 aa19.62■□□□□ 0.73
PTPRK-208ENST00000392449 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.62■□□□□ 0.73
PTPRK-208ENST00000392449 PRKAG2Q9UGJ0 569 aa19.62■□□□□ 0.73
PTPRK-208ENST00000392449 CCDC171Q6TFL3 1326 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 A0A1W2PQ45 241 aaPredicted RBP19.61■□□□□ 0.73
PTPRK-208ENST00000392449 A0A1W2PQY0 241 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 TRIM43BA6NCK2 446 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 FGRP09769 529 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 CCDC96Q2M329 555 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 TTBK2Q6IQ55 1244 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 RCSD1Q6JBY9 416 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.61■□□□□ 0.73
PTPRK-208ENST00000392449 CHD1LQ86WJ1 897 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 MSL3Q8N5Y2 521 aaKnown RBP19.61■□□□□ 0.73
PTPRK-208ENST00000392449 CHURC1Q8WUH1 139 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 TRIM43Q96BQ3 446 aaPredicted RBP19.61■□□□□ 0.73
PTPRK-208ENST00000392449 A1CFQ9NQ94 594 aaKnown RBP19.61■□□□□ 0.73
PTPRK-208ENST00000392449 FBXO40Q9UH90 709 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 PRR12Q9ULL5 1215 aa19.61■□□□□ 0.73
PTPRK-208ENST00000392449 ALAS1P13196 640 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 SLC16A2P36021 539 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 NOVP48745 357 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 NUCB1Q02818 461 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 TLE2Q04725 743 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 ACVR2BQ13705 512 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 MUM1L1Q5H9M0 696 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 ARMCX2Q7L311 632 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 ZNF467Q7Z7K2 595 aaPredicted RBP19.6■□□□□ 0.73
PTPRK-208ENST00000392449 TBC1D10CQ8IV04 446 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 CCDC144CPQ8IYA2 1237 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 BADQ92934 168 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 ACAD9Q9H845 621 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 FAM184BQ9ULE4 1060 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 LCTP09848 1927 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 ASTN1O14525 1302 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 FRMPD2Q68DX3 1309 aaPredicted RBP19.6■□□□□ 0.73
PTPRK-208ENST00000392449 SDSP20132 328 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 PTGS1P23219 599 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 ITGB8P26012 769 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 CCDC144BQ3MJ40 725 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 DEFB123Q8N688 67 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 TRERF1Q96PN7 1200 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 TMEM47Q9BQJ4 181 aa19.6■□□□□ 0.73
PTPRK-208ENST00000392449 LRRC37A2A6NM11 1700 aa19.59■□□□□ 0.73
PTPRK-208ENST00000392449 SOWAHBA6NEL2 793 aa19.59■□□□□ 0.73
PTPRK-208ENST00000392449 POTEB2H3BUK9 544 aa19.59■□□□□ 0.73
PTPRK-208ENST00000392449 PQBP1O60828 265 aaKnown RBP19.59■□□□□ 0.73
PTPRK-208ENST00000392449 ACLYP53396 1101 aa19.59■□□□□ 0.73
PTPRK-208ENST00000392449 PPP4R3BQ5MIZ7 849 aa19.59■□□□□ 0.73
PTPRK-208ENST00000392449 FAM133AQ8N9E0 248 aa19.59■□□□□ 0.73
PTPRK-208ENST00000392449 PURBQ96QR8 312 aaKnown RBP19.59■□□□□ 0.73
PTPRK-208ENST00000392449 KATNBL1Q9H079 304 aa19.59■□□□□ 0.73
PTPRK-208ENST00000392449 FDX1P10109 184 aa19.58■□□□□ 0.72
PTPRK-208ENST00000392449 KCNA10Q16322 511 aa19.58■□□□□ 0.72
PTPRK-208ENST00000392449 C9orf50Q5SZB4 431 aa19.58■□□□□ 0.72
PTPRK-208ENST00000392449 C1orf53Q5VUE5 145 aa19.58■□□□□ 0.72
PTPRK-208ENST00000392449 CCSAPQ6IQ19 270 aaPredicted RBP19.58■□□□□ 0.72
PTPRK-208ENST00000392449 KLHDC9Q8NEP7 349 aa19.58■□□□□ 0.72
PTPRK-208ENST00000392449 GPCPD1Q9NPB8 672 aa19.58■□□□□ 0.72
PTPRK-208ENST00000392449 ZMYM6O95789 1325 aa19.57■□□□□ 0.72
PTPRK-208ENST00000392449 NEDD4P46934 1319 aa19.57■□□□□ 0.72
PTPRK-208ENST00000392449 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.57■□□□□ 0.72
PTPRK-208ENST00000392449 PLA2G6O60733 806 aa19.57■□□□□ 0.72
PTPRK-208ENST00000392449 C6orf222P0C671 652 aaPredicted RBP19.57■□□□□ 0.72
PTPRK-208ENST00000392449 AAMPQ13685 434 aa19.57■□□□□ 0.72
PTPRK-208ENST00000392449 SHHQ15465 462 aa19.57■□□□□ 0.72
PTPRK-208ENST00000392449 DCAF4Q8WV16 495 aa19.57■□□□□ 0.72
PTPRK-208ENST00000392449 ABHD16BQ9H3Z7 469 aa19.57■□□□□ 0.72
PTPRK-208ENST00000392449 CCPG1Q9ULG6 757 aa19.57■□□□□ 0.72
PTPRK-208ENST00000392449 LAMA4Q16363 1823 aa19.57■□□□□ 0.72
PTPRK-208ENST00000392449 DUSP11O75319 330 aaKnown RBP19.56■□□□□ 0.72
PTPRK-208ENST00000392449 TOP1P11387 765 aaKnown RBP19.56■□□□□ 0.72
PTPRK-208ENST00000392449 AKNAD1Q5T1N1 836 aa19.56■□□□□ 0.72
PTPRK-208ENST00000392449 CWC27Q6UX04 472 aaKnown RBP19.56■□□□□ 0.72
PTPRK-208ENST00000392449 ZKSCAN3Q9BRR0 538 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms