RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 RSPH3Q86UC2 560 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 CCDC125Q86Z20 511 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 CEP170P1Q96L14 293 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 SLC7A5P2Q9GIP4 190 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 TBK1Q9UHD2 729 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 MAP3K5Q99683 1374 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 SUSD4Q5VX71 490 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 MIS12Q9H081 205 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 ARFGAP3Q9NP61 516 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 A0A0D9SFI3 127 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 ALDH1L1O75891 902 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 ERFP50548 548 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 EIF4A1P60842 406 aaKnown RBP8.1□□□□□ -1.11
VPS13A-202ENST00000357409 HSPH1Q92598 858 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 PCDHB4Q9Y5E5 795 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 IRF1P10914 325 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 OSBPP22059 807 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 PIK3CAP42336 1068 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 DCTPP1Q9H773 170 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 RTL9Q8NET4 1388 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 BICDL2A1A5D9 508 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 GMNNO75496 209 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 ATP2B4P23634 1241 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 PAK1Q13153 545 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 GNPTABQ3T906 1256 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 ADALQ6DHV7 355 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 PASD1Q8IV76 773 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 LBHD1Q9BQE6 289 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-202ENST00000357409 USP26Q9BXU7 913 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 SARS2Q9NP81 518 aaKnown RBP8.1□□□□□ -1.11
VPS13A-202ENST00000357409 FBXL5Q9UKA1 691 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 DENND4BO75064 1496 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-202ENST00000357409 ELF1P32519 619 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 ATP1A2P50993 1020 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 FANCCQ00597 558 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 UNC5CLQ8IV45 518 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 PGBD3Q8N328 593 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 SPIRE2Q8WWL2 714 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 HOOK2Q96ED9 719 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 CBX8Q9HC52 389 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 KRBA2Q6ZNG9 492 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 PIGSQ96S52 555 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 ADPGKQ9BRR6 497 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 PIDD1Q9HB75 910 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 GDAQ9Y2T3 454 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 HSPA4P34932 840 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 EAF2Q96CJ1 260 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-202ENST00000357409 ZNF804BA4D1E1 1349 aa8.1□□□□□ -1.11
VPS13A-202ENST00000357409 POTEB2H3BUK9 544 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 MICALCLQ6ZW33 695 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 TEKT3Q9BXF9 490 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 ANAPC4Q9UJX5 808 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 RIMS2Q9UQ26 1411 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 NEURL1BA8MQ27 555 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 PPFIA2O75334 1257 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 CTSHP09668 335 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 CYP2D6P10635 497 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 PEX3P56589 373 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 TRIM50Q86XT4 487 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 ZNF148Q9UQR1 794 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 KAT6BQ8WYB5 2073 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 DYNC1I1O14576 645 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 TLR3O15455 904 aaKnown RBP8.09□□□□□ -1.11
VPS13A-202ENST00000357409 TNNC2P02585 160 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 TRAF1Q13077 416 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 RFX6Q8HWS3 928 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 OR6B3Q8NGW1 331 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 ATP6V1E2Q96A05 226 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 KCTD2Q14681 263 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 PARP10Q53GL7 1025 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 CDAN1Q8IWY9 1227 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 CHURC1Q8WUH1 139 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 LMBR1Q8WVP7 490 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 FZD1Q9UP38 647 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 TNKSO95271 1327 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 PPP2R3AQ06190 1150 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 IL31Q6EBC2 164 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 EIF4E1BA6NMX2 242 aaKnown RBP8.09□□□□□ -1.11
VPS13A-202ENST00000357409 SGK1O00141 431 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 MOCS2O96007 188 aaPredicted RBP8.09□□□□□ -1.11
VPS13A-202ENST00000357409 ECE1P42892 770 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 SEPT6Q14141 434 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 OR6B2Q6IFH4 312 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 EPHB1P54762 984 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 MSANTD4Q8NCY6 345 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 NUCKS1Q9H1E3 243 aaKnown RBP8.09□□□□□ -1.11
VPS13A-202ENST00000357409 FANCAO15360 1455 aa8.09□□□□□ -1.11
VPS13A-202ENST00000357409 FAM178BQ8IXR5 827 aa8.09□□□□□ -1.12
VPS13A-202ENST00000357409 HDAC11Q96DB2 347 aa8.09□□□□□ -1.12
VPS13A-202ENST00000357409 UTP11Q9Y3A2 253 aaKnown RBP8.09□□□□□ -1.12
VPS13A-202ENST00000357409 SLC9C1Q4G0N8 1177 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 HAUS3Q68CZ6 603 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 HYOU1Q9Y4L1 999 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 ZHX2Q9Y6X8 837 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 ZNF608Q9ULD9 1512 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-202ENST00000357409 C2CD2LO14523 706 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 TBC1D12O60347 775 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 CYP2B6P20813 491 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 IL13P35225 146 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 MYL5Q02045 173 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms