RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 AFMP43652 599 aa17.04■□□□□ 0.32
TPM3-208ENST00000341485 GOLGA8FQ08AF8 430 aa17.04■□□□□ 0.32
TPM3-208ENST00000341485 GOLGA8DPQ0D2H9 430 aa17.04■□□□□ 0.32
TPM3-208ENST00000341485 SYCP1Q15431 976 aa17.04■□□□□ 0.32
TPM3-208ENST00000341485 ARID3AQ99856 593 aa17.04■□□□□ 0.32
TPM3-208ENST00000341485 PI4KBQ9UBF8 816 aa17.04■□□□□ 0.32
TPM3-208ENST00000341485 ARFGEF1Q9Y6D6 1849 aa17.04■□□□□ 0.32
TPM3-208ENST00000341485 VWA3AA6NCI4 1184 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 DDTLA6NHG4 134 aaPredicted RBP17.03■□□□□ 0.32
TPM3-208ENST00000341485 CASP1P29466 404 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 TMEM47Q9BQJ4 181 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 MTMR7Q9Y216 660 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 CLRN2A0PK11 232 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 KIF2AO00139 706 aaPredicted RBP17.03■□□□□ 0.32
TPM3-208ENST00000341485 AKR1B1P15121 316 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 TRAPPC10P48553 1259 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 DPYDQ12882 1025 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 STAG2Q8N3U4 1231 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 CEP95Q96GE4 821 aa17.03■□□□□ 0.32
TPM3-208ENST00000341485 SAMSN1Q9NSI8 373 aaKnown RBP17.03■□□□□ 0.32
TPM3-208ENST00000341485 PLIN4Q96Q06 1357 aa17.02■□□□□ 0.32
TPM3-208ENST00000341485 TCP10L2B9ZVM9 353 aa17.02■□□□□ 0.32
TPM3-208ENST00000341485 MPHOSPH10O00566 681 aaKnown RBP17.02■□□□□ 0.32
TPM3-208ENST00000341485 ERCC5P28715 1186 aaPredicted RBP17.02■□□□□ 0.32
TPM3-208ENST00000341485 SHMT1P34896 483 aa17.02■□□□□ 0.32
TPM3-208ENST00000341485 EIF6P56537 245 aaKnown RBP17.02■□□□□ 0.32
TPM3-208ENST00000341485 TBX2Q13207 712 aaPredicted RBP17.02■□□□□ 0.32
TPM3-208ENST00000341485 NAA30Q147X3 362 aaPredicted RBP17.02■□□□□ 0.32
TPM3-208ENST00000341485 GRM4Q14833 912 aa17.02■□□□□ 0.32
TPM3-208ENST00000341485 KIF18AQ8NI77 898 aa17.02■□□□□ 0.32
TPM3-208ENST00000341485 CCDC34Q96HJ3 373 aa17.02■□□□□ 0.32
TPM3-208ENST00000341485 ZNF70Q9UC06 446 aaPredicted RBP17.02■□□□□ 0.32
TPM3-208ENST00000341485 CD44P16070 742 aaKnown RBP17.01■□□□□ 0.31
TPM3-208ENST00000341485 CDK11BP21127 795 aaKnown RBP17.01■□□□□ 0.31
TPM3-208ENST00000341485 IL17AQ16552 155 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 UBE2Q2Q8WVN8 375 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 GPKOWQ92917 476 aaPredicted RBP eCLIP17.01■□□□□ 0.311e-12■□□□□ 9.1
TPM3-208ENST00000341485 CCDC94Q9BW85 323 aaPredicted RBP17.01■□□□□ 0.31
TPM3-208ENST00000341485 MCM7P33993 719 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 CUL4BQ13620 913 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 E2F4Q16254 413 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 SLC35G1Q2M3R5 365 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 GLIPR1L2Q4G1C9 344 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 SH3BP5LQ7L8J4 393 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 TMEM139Q8IV31 216 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 PDCL2Q8N4E4 241 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 VEZTQ9HBM0 779 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 MAD2L2Q9UI95 211 aa17.01■□□□□ 0.31
TPM3-208ENST00000341485 CALML3P27482 149 aa17■□□□□ 0.31
TPM3-208ENST00000341485 GNAQP50148 359 aa17■□□□□ 0.31
TPM3-208ENST00000341485 CT47A1Q5JQC4 288 aaPredicted RBP17■□□□□ 0.31
TPM3-208ENST00000341485 BLIDQ8IZY5 108 aa17■□□□□ 0.31
TPM3-208ENST00000341485 MTMR14Q8NCE2 650 aa17■□□□□ 0.31
TPM3-208ENST00000341485 CCDC17Q96LX7 622 aa17■□□□□ 0.31
TPM3-208ENST00000341485 SH3GLB2Q9NR46 395 aa17■□□□□ 0.31
TPM3-208ENST00000341485 FAM196BA6NMK8 535 aa17■□□□□ 0.31
TPM3-208ENST00000341485 RPS12P25398 132 aaKnown RBP17■□□□□ 0.31
TPM3-208ENST00000341485 SPDYE2Q495Y8 402 aa17■□□□□ 0.31
TPM3-208ENST00000341485 TYW1BQ6NUM6 668 aa17■□□□□ 0.31
TPM3-208ENST00000341485 GSDMAQ96QA5 445 aa17■□□□□ 0.31
TPM3-208ENST00000341485 FHDC1Q9C0D6 1143 aaPredicted RBP17■□□□□ 0.31
TPM3-208ENST00000341485 MTMR4Q9NYA4 1195 aa17■□□□□ 0.31
TPM3-208ENST00000341485 GJA3Q9Y6H8 435 aa17■□□□□ 0.31
TPM3-208ENST00000341485 SIPA1L1O43166 1804 aa17■□□□□ 0.31
TPM3-208ENST00000341485 COL2A1P02458 1487 aaPredicted RBP16.99■□□□□ 0.31
TPM3-208ENST00000341485 ATRNL1Q5VV63 1379 aa16.99■□□□□ 0.31
TPM3-208ENST00000341485 CERKLQ49MI3 558 aaPredicted RBP16.99■□□□□ 0.31
TPM3-208ENST00000341485 C4orf32Q8N8J7 132 aa16.99■□□□□ 0.31
TPM3-208ENST00000341485 CSRNP1Q96S65 589 aa16.99■□□□□ 0.31
TPM3-208ENST00000341485 DNAJC18Q9H819 358 aa16.99■□□□□ 0.31
TPM3-208ENST00000341485 MYOZ2Q9NPC6 264 aa16.99■□□□□ 0.31
TPM3-208ENST00000341485 ZNF215Q9UL58 517 aaPredicted RBP16.99■□□□□ 0.31
TPM3-208ENST00000341485 PCDHA4Q9UN74 947 aa16.99■□□□□ 0.31
TPM3-208ENST00000341485 SLURP2P0DP57 97 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 STX17P56962 302 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 PPP4R3BQ5MIZ7 849 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 SPATA1Q5VX52 437 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 SPECC1LQ69YQ0 1117 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 KLHL10Q6JEL2 608 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 PDXDC2PQ6P474 469 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 SYT10Q6XYQ8 523 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 ARHGAP27Q6ZUM4 889 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 SMYD4Q8IYR2 804 aaPredicted RBP16.98■□□□□ 0.31
TPM3-208ENST00000341485 RASGRP4Q8TDF6 673 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 STAMQ92783 540 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 SYNRGQ9UMZ2 1314 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 IGKV6D-41A0A0C4DH26 115 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 A0A1B0GTH6 734 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 PPP1R3GB7ZBB8 358 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 M0R2N6 131 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 CCP110O43303 1012 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 TTLL1O95922 423 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 NOVP48745 357 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 MMP14P50281 582 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 NR1I3Q14994 352 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 APTXQ7Z2E3 356 aaKnown RBP16.98■□□□□ 0.31
TPM3-208ENST00000341485 IQUBQ8NA54 791 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 FAM151AQ8WW52 585 aa16.98■□□□□ 0.31
TPM3-208ENST00000341485 FZD9O00144 591 aa16.97■□□□□ 0.31
TPM3-208ENST00000341485 CYTH3O43739 400 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms