RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 C4orf50Q6ZRC1 276 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 FAM151AQ8WW52 585 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 IWS1Q96ST2 819 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 MMS19Q96T76 1030 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 GOLGA6AQ9NYA3 693 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 IBTKQ9P2D0 1353 aaPredicted RBP9.41□□□□□ -0.9
HMGB1-203ENST00000341423 BNIP3LO60238 219 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 PRDM1O75626 825 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 TTLL1O95922 423 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 ACADMP11310 421 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 THPOP40225 353 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 TMEM57Q8N5G2 664 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 SPATA33Q96N06 139 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 PNMA5Q96PV4 448 aa9.41□□□□□ -0.9
HMGB1-203ENST00000341423 SRPK1Q96SB4 655 aaKnown RBP9.41□□□□□ -0.9
HMGB1-203ENST00000341423 PBRM1Q86U86 1689 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 NDUFS2O75306 463 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 RPS6KA5O75582 802 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 TOP1P11387 765 aaKnown RBP9.4□□□□□ -0.9
HMGB1-203ENST00000341423 PRKAR2AP13861 404 aaKnown RBP9.4□□□□□ -0.9
HMGB1-203ENST00000341423 ME1P48163 572 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 TFCP2Q12800 502 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 EIF2B5Q13144 721 aaKnown RBP9.4□□□□□ -0.9
HMGB1-203ENST00000341423 FKBP15Q5T1M5 1219 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 TBC1D16Q8TBP0 767 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 PIK3R5Q8WYR1 880 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 TEKT3Q9BXF9 490 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 SYN1P17600 705 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 CIITAP33076 1130 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 NEK4P51957 841 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 SEPT7Q16181 437 aaKnown RBP9.4□□□□□ -0.9
HMGB1-203ENST00000341423 ADALQ6DHV7 355 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 TDRD7Q8NHU6 1098 aaKnown RBP9.4□□□□□ -0.9
HMGB1-203ENST00000341423 SCFD2Q8WU76 684 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 SEC31BQ9NQW1 1179 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 ATP8A2Q9NTI2 1148 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 AOC2O75106 756 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 CYP2E1P05181 493 aaPredicted RBP9.4□□□□□ -0.9
HMGB1-203ENST00000341423 CYP19A1P11511 503 aaPredicted RBP9.4□□□□□ -0.9
HMGB1-203ENST00000341423 CDR1P51861 262 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 PTH1RQ03431 593 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 TBC1D9Q6ZT07 1266 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 LPAR1Q92633 364 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 COLEC11Q9BWP8 271 aa9.4□□□□□ -0.9
HMGB1-203ENST00000341423 CACYBPQ9HB71 228 aaKnown RBP9.4□□□□□ -0.9
HMGB1-203ENST00000341423 ALDH1A2O94788 518 aa9.4□□□□□ -0.91
HMGB1-203ENST00000341423 KLRC2P26717 231 aa9.4□□□□□ -0.91
HMGB1-203ENST00000341423 KIF11P52732 1056 aa9.4□□□□□ -0.91
HMGB1-203ENST00000341423 GABPB2Q8TAK5 448 aaPredicted RBP9.4□□□□□ -0.91
HMGB1-203ENST00000341423 SNX25Q9H3E2 840 aa9.4□□□□□ -0.91
HMGB1-203ENST00000341423 NDC80O14777 642 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 PRKCQQ04759 706 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 INAVAQ3KP66 663 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 COLEC12Q5KU26 742 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 LRRC69Q6ZNQ3 347 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 RNF139Q8WU17 664 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 TLE6Q9H808 572 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 PRKRIP1Q9H875 184 aaPredicted RBP9.39□□□□□ -0.91
HMGB1-203ENST00000341423 SEPT9Q9UHD8 586 aaPredicted RBP9.39□□□□□ -0.91
HMGB1-203ENST00000341423 RSPH10B2B2RC85 870 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 RSPH10BP0C881 870 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 MARK3P27448 753 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 ZNF467Q7Z7K2 595 aaPredicted RBP9.39□□□□□ -0.91
HMGB1-203ENST00000341423 RAB11FIP4Q86YS3 637 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 CAND2O75155 1236 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 CD19P15391 556 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 FLT3LGP49771 235 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 TIMM10P62072 90 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 DGKDQ16760 1214 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 SPECC1Q5M775 1068 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 JAKMIP3Q5VZ66 844 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 PLA2G4DQ86XP0 818 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 GREM2Q9H772 168 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 SBNO2Q9Y2G9 1366 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 HOXC6P09630 235 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 EZRP15311 586 aaKnown RBP9.39□□□□□ -0.91
HMGB1-203ENST00000341423 RAD51Q06609 339 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 CACNA2D4Q7Z3S7 1137 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 TTC30BQ8N4P2 665 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 TCP11Q8WWU5 503 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 TRERF1Q96PN7 1200 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 PDRG1Q9NUG6 133 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 CDHR2Q9BYE9 1310 aa9.39□□□□□ -0.91
HMGB1-203ENST00000341423 TRAF5O00463 557 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 CYP27B1O15528 508 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 ZBTB48P10074 688 aaPredicted RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 HSPD1P10809 573 aaKnown RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 MTERF2Q49AM1 385 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 NCAPH2Q6IBW4 605 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 SMIM5Q71RC9 77 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 TBC1D5Q92609 795 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 ABCG4Q9H172 646 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 ENTPD3O75355 529 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 TMEM191BP0C7N4 346 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 MCM2P49736 904 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 RRP1P56182 461 aaKnown RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 CEBPZQ03701 1054 aaKnown RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 PAN2Q504Q3 1202 aaKnown RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 KIF24Q5T7B8 1368 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 ZSCAN31Q96LW9 406 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms