RNA–Protein interactions for RNA: ENST00000337571.8

CAPN3-202, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,271 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-202ENST00000337571 TRIM60Q495X7 471 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 MAMDC4Q6UXC1 1216 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 CCDC129Q6ZRS4 1044 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 TICAM2Q86XR7 235 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 NUP133Q8WUM0 1156 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 STAG1Q8WVM7 1258 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 CHMP4CQ96CF2 233 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 GMCL1Q96IK5 515 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 SPC25Q9HBM1 224 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 HOMER2Q9NSB8 354 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 ZHX1Q9UKY1 873 aaPredicted RBP12.62□□□□□ -0.39
CAPN3-202ENST00000337571 PHF24Q9UPV7 400 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 TACC3Q9Y6A5 838 aa12.62□□□□□ -0.39
CAPN3-202ENST00000337571 COL6A3P12111 3177 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 PLIN4Q96Q06 1357 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 DNAJC25-GNG10A0A024R161 153 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 TLE2Q04725 743 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 ACVR2BQ13705 512 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 MCMDC2Q4G0Z9 681 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 C1orf53Q5VUE5 145 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 RCSD1Q6JBY9 416 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 SLC17A8Q8NDX2 589 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 VTI1AQ96AJ9 217 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 FAM212AQ96EL1 285 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 TSEN34Q9BSV6 310 aaKnown RBP12.61□□□□□ -0.39
CAPN3-202ENST00000337571 ABHD16BQ9H3Z7 469 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 RWDD1Q9H446 243 aaPredicted RBP12.61□□□□□ -0.39
CAPN3-202ENST00000337571 ACAD9Q9H845 621 aa12.61□□□□□ -0.39
CAPN3-202ENST00000337571 PLA2G6O60733 806 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 DUSP11O75319 330 aaKnown RBP12.6□□□□□ -0.39
CAPN3-202ENST00000337571 SNAI1O95863 264 aaPredicted RBP12.6□□□□□ -0.39
CAPN3-202ENST00000337571 ACLYP53396 1101 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 SNX17Q15036 470 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 ALX1Q15699 326 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 TKFCQ3LXA3 575 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 RRP12Q5JTH9 1297 aaKnown RBP12.6□□□□□ -0.39
CAPN3-202ENST00000337571 KCTD1Q719H9 257 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 BADQ92934 168 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 RILPL2Q969X0 211 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 YTHDC1Q96MU7 727 aaKnown RBP12.6□□□□□ -0.39
CAPN3-202ENST00000337571 INCENPQ9NQS7 918 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.6□□□□□ -0.39
CAPN3-202ENST00000337571 ANAPC4Q9UJX5 808 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 MTMR7Q9Y216 660 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 SALL3Q9BXA9 1300 aa12.6□□□□□ -0.39
CAPN3-202ENST00000337571 A0A1W2PQ45 241 aaPredicted RBP12.59□□□□□ -0.39
CAPN3-202ENST00000337571 A0A1W2PQY0 241 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 MOXD2PA6NHM9 499 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 DCDC2CA8MYV0 355 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 POTEB2H3BUK9 544 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 PQBP1O60828 265 aaKnown RBP12.59□□□□□ -0.39
CAPN3-202ENST00000337571 FGAP02671 866 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 CLTBP09497 229 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 C6orf222P0C671 652 aaPredicted RBP12.59□□□□□ -0.39
CAPN3-202ENST00000337571 ALAS1P13196 640 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 RAG1P15918 1043 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 MFAP1P55081 439 aaKnown RBP12.59□□□□□ -0.39
CAPN3-202ENST00000337571 KCNA10Q16322 511 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 CCDC144BQ3MJ40 725 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 VPS53Q5VIR6 699 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 B4GALNT3Q6L9W6 998 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 CCDC174Q6PII3 467 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 NOL8Q76FK4 1167 aaKnown RBP12.59□□□□□ -0.39
CAPN3-202ENST00000337571 Q7L0L9 218 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.59□□□□□ -0.39
CAPN3-202ENST00000337571 PCSK9Q8NBP7 692 aaKnown RBP12.59□□□□□ -0.39
CAPN3-202ENST00000337571 SPOCK2Q92563 424 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 AGBL1Q96MI9 1066 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 GLT1D1Q96MS3 346 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 TRERF1Q96PN7 1200 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 LNPKQ9C0E8 428 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 STARD7Q9NQZ5 370 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 IL17RBQ9NRM6 502 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 RNF146Q9NTX7 359 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 TMEM39AQ9NV64 488 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.59□□□□□ -0.39
CAPN3-202ENST00000337571 SYNRGQ9UMZ2 1314 aa12.59□□□□□ -0.39
CAPN3-202ENST00000337571 ASB14A6NK59 587 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 ORC4O43929 436 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 NMT2O60551 498 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 ADAMTS4O75173 837 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 CCDC96Q2M329 555 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 GNASQ5JWF2 1037 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 ARMCX2Q7L311 632 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 CCDC144CPQ8IYA2 1237 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 DCAF4Q8WV16 495 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 LENG1Q96BZ8 264 aaPredicted RBP12.58□□□□□ -0.4
CAPN3-202ENST00000337571 PDLIM7Q9NR12 457 aa12.58□□□□□ -0.4
CAPN3-202ENST00000337571 TRIM43BA6NCK2 446 aa12.57□□□□□ -0.4
CAPN3-202ENST00000337571 HSPD1P10809 573 aaKnown RBP12.57□□□□□ -0.4
CAPN3-202ENST00000337571 TOP1P11387 765 aaKnown RBP12.57□□□□□ -0.4
CAPN3-202ENST00000337571 CLCN6P51797 869 aa12.57□□□□□ -0.4
CAPN3-202ENST00000337571 SHHQ15465 462 aa12.57□□□□□ -0.4
CAPN3-202ENST00000337571 MFSD6Q6ZSS7 791 aa12.57□□□□□ -0.4
CAPN3-202ENST00000337571 SH3RF1Q7Z6J0 888 aa12.57□□□□□ -0.4
CAPN3-202ENST00000337571 KLHDC9Q8NEP7 349 aa12.57□□□□□ -0.4
CAPN3-202ENST00000337571 TRIM43Q96BQ3 446 aaPredicted RBP12.57□□□□□ -0.4
CAPN3-202ENST00000337571 FAM227BQ96M60 508 aa12.57□□□□□ -0.4
CAPN3-202ENST00000337571 TOX2Q96NM4 488 aa12.57□□□□□ -0.4
CAPN3-202ENST00000337571 A1CFQ9NQ94 594 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms