RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GOLGA8HP0CJ92 632 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 CCND3P30281 292 aaPredicted RBP18.56■□□□□ 0.56
CLN3-201ENST00000333496 CYP2C19P33261 490 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 COL9A3Q14050 684 aaPredicted RBP18.56■□□□□ 0.56
CLN3-201ENST00000333496 KCTD2Q14681 263 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 SYDE2Q5VT97 1194 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 OLFML2BQ68BL8 750 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 MAML3Q96JK9 1138 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 CRISPLD2Q9H0B8 497 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 RANBP17Q9H2T7 1088 aaKnown RBP18.56■□□□□ 0.56
CLN3-201ENST00000333496 PDE4DIPQ5VU43 2346 aa18.55■□□□□ 0.56
CLN3-201ENST00000333496 ANTXR2P58335 489 aa18.55■□□□□ 0.56
CLN3-201ENST00000333496 ZNF792Q3KQV3 632 aa18.55■□□□□ 0.56
CLN3-201ENST00000333496 IFIT1BQ5T764 474 aaKnown RBP18.55■□□□□ 0.56
CLN3-201ENST00000333496 CREB3L3Q68CJ9 461 aa18.55■□□□□ 0.56
CLN3-201ENST00000333496 CCDC174Q6PII3 467 aa18.55■□□□□ 0.56
CLN3-201ENST00000333496 CHST3Q7LGC8 479 aa18.55■□□□□ 0.56
CLN3-201ENST00000333496 MB21D2Q8IYB1 491 aaPredicted RBP18.55■□□□□ 0.56
CLN3-201ENST00000333496 SENP2Q9HC62 589 aa18.55■□□□□ 0.56
CLN3-201ENST00000333496 DNAJC25-GNG10A0A024R161 153 aa18.54■□□□□ 0.56
CLN3-201ENST00000333496 TAL1P17542 331 aaPredicted RBP18.54■□□□□ 0.56
CLN3-201ENST00000333496 GPATCH4Q5T3I0 446 aaKnown RBP18.54■□□□□ 0.56
CLN3-201ENST00000333496 MFSD14CQ5VZR4 134 aa18.54■□□□□ 0.56
CLN3-201ENST00000333496 RALYLQ86SE5 291 aaKnown RBP18.54■□□□□ 0.56
CLN3-201ENST00000333496 CHST13Q8NET6 341 aa18.54■□□□□ 0.56
CLN3-201ENST00000333496 CPVLQ9H3G5 476 aa18.54■□□□□ 0.56
CLN3-201ENST00000333496 HOMER2Q9NSB8 354 aa18.54■□□□□ 0.56
CLN3-201ENST00000333496 SLC5A4Q9NY91 659 aa18.54■□□□□ 0.56
CLN3-201ENST00000333496 CASC1Q6TDU7 716 aa18.53■□□□□ 0.56
CLN3-201ENST00000333496 UBE2Q1Q7Z7E8 422 aa18.53■□□□□ 0.56
CLN3-201ENST00000333496 TRPV1Q8NER1 839 aa18.53■□□□□ 0.56
CLN3-201ENST00000333496 IFIT3O14879 490 aaKnown RBP18.52■□□□□ 0.56
CLN3-201ENST00000333496 UBA5Q9GZZ9 404 aa18.52■□□□□ 0.56
CLN3-201ENST00000333496 RNF146Q9NTX7 359 aa18.52■□□□□ 0.56
CLN3-201ENST00000333496 FBXO40Q9UH90 709 aa18.52■□□□□ 0.56
CLN3-201ENST00000333496 DIS3Q9Y2L1 958 aaKnown RBP18.52■□□□□ 0.56
CLN3-201ENST00000333496 DNAH12Q6ZR08 3092 aa18.52■□□□□ 0.56
CLN3-201ENST00000333496 BAZ2BQ9UIF8 2168 aaKnown RBP18.52■□□□□ 0.56
CLN3-201ENST00000333496 TFRCP02786 760 aaKnown RBP18.52■□□□□ 0.55
CLN3-201ENST00000333496 ICAM1P05362 532 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 ALAS1P13196 640 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 CYBAP13498 195 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 MUM1L1Q5H9M0 696 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 LHX8Q68G74 356 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 IGDCC4Q8TDY8 1250 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 DDX11Q96FC9 970 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 TRERF1Q96PN7 1200 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 ACAD9Q9H845 621 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 CCPG1Q9ULG6 757 aa18.52■□□□□ 0.55
CLN3-201ENST00000333496 TKFCQ3LXA3 575 aa18.51■□□□□ 0.55
CLN3-201ENST00000333496 ASPRV1Q53RT3 343 aa18.51■□□□□ 0.55
CLN3-201ENST00000333496 PRAMEF19Q5SWL8 479 aa18.51■□□□□ 0.55
CLN3-201ENST00000333496 ANKRD35Q8N283 1001 aa18.51■□□□□ 0.55
CLN3-201ENST00000333496 STAG2Q8N3U4 1231 aa18.51■□□□□ 0.55
CLN3-201ENST00000333496 FGD4Q96M96 766 aa18.51■□□□□ 0.55
CLN3-201ENST00000333496 A1CFQ9NQ94 594 aaKnown RBP18.51■□□□□ 0.55
CLN3-201ENST00000333496 ALPK3Q96L96 1907 aa18.51■□□□□ 0.55
CLN3-201ENST00000333496 PARP1P09874 1014 aaKnown RBP18.5■□□□□ 0.55
CLN3-201ENST00000333496 WTAPQ15007 396 aa18.5■□□□□ 0.55
CLN3-201ENST00000333496 TINF2Q9BSI4 451 aa18.5■□□□□ 0.55
CLN3-201ENST00000333496 GPHNQ9NQX3 736 aaPredicted RBP18.5■□□□□ 0.55
CLN3-201ENST00000333496 OGDHLQ9ULD0 1010 aa18.5■□□□□ 0.55
CLN3-201ENST00000333496 ERICH2A1L162 156 aa18.49■□□□□ 0.55
CLN3-201ENST00000333496 MNX1P50219 401 aaPredicted RBP18.49■□□□□ 0.55
CLN3-201ENST00000333496 MAD2L2Q9UI95 211 aa18.49■□□□□ 0.55
CLN3-201ENST00000333496 CAPN2P17655 700 aa18.49■□□□□ 0.55
CLN3-201ENST00000333496 TROAPQ12815 778 aa18.49■□□□□ 0.55
CLN3-201ENST00000333496 SART3Q15020 963 aaKnown RBP18.49■□□□□ 0.55
CLN3-201ENST00000333496 TMEM67Q5HYA8 995 aa18.49■□□□□ 0.55
CLN3-201ENST00000333496 RASEFQ8IZ41 740 aa18.49■□□□□ 0.55
CLN3-201ENST00000333496 ADGRF4Q8IZF3 695 aa18.49■□□□□ 0.55
CLN3-201ENST00000333496 FAM133AQ8N9E0 248 aa18.49■□□□□ 0.55
CLN3-201ENST00000333496 LY9Q9HBG7 655 aa18.49■□□□□ 0.55
CLN3-201ENST00000333496 PALM3A6NDB9 673 aaPredicted RBP18.48■□□□□ 0.55
CLN3-201ENST00000333496 PRC1O43663 620 aa18.48■□□□□ 0.55
CLN3-201ENST00000333496 FARP2O94887 1054 aaPredicted RBP18.48■□□□□ 0.55
CLN3-201ENST00000333496 CNGA1P29973 690 aa18.48■□□□□ 0.55
CLN3-201ENST00000333496 MCM5P33992 734 aa18.48■□□□□ 0.55
CLN3-201ENST00000333496 CNTN2Q02246 1040 aa18.48■□□□□ 0.55
CLN3-201ENST00000333496 TSGA10IPQ3SY00 556 aa18.48■□□□□ 0.55
CLN3-201ENST00000333496 MAMDC4Q6UXC1 1216 aa18.48■□□□□ 0.55
CLN3-201ENST00000333496 DIS3LQ8TF46 1054 aaKnown RBP18.48■□□□□ 0.55
CLN3-201ENST00000333496 DDX20Q9UHI6 824 aaKnown RBP18.48■□□□□ 0.55
CLN3-201ENST00000333496 NFIBO00712 420 aa18.47■□□□□ 0.55
CLN3-201ENST00000333496 SNAI1O95863 264 aaPredicted RBP18.47■□□□□ 0.55
CLN3-201ENST00000333496 RNF20Q5VTR2 975 aa18.47■□□□□ 0.55
CLN3-201ENST00000333496 ZNF467Q7Z7K2 595 aaPredicted RBP18.47■□□□□ 0.55
CLN3-201ENST00000333496 CLEC4DQ8WXI8 215 aa18.47■□□□□ 0.55
CLN3-201ENST00000333496 MTA3Q9BTC8 594 aa18.47■□□□□ 0.55
CLN3-201ENST00000333496 JMJD4Q9H9V9 463 aa18.47■□□□□ 0.55
CLN3-201ENST00000333496 CYP39A1Q9NYL5 469 aa18.47■□□□□ 0.55
CLN3-201ENST00000333496 WDR19Q8NEZ3 1342 aa18.47■□□□□ 0.55
CLN3-201ENST00000333496 KLRF2D3W0D1 207 aa18.46■□□□□ 0.55
CLN3-201ENST00000333496 GRM4Q14833 912 aa18.46■□□□□ 0.55
CLN3-201ENST00000333496 CDC37Q16543 378 aaPredicted RBP18.46■□□□□ 0.55
CLN3-201ENST00000333496 SLC35G1Q2M3R5 365 aa18.46■□□□□ 0.55
CLN3-201ENST00000333496 ADCK5Q3MIX3 580 aa18.46■□□□□ 0.55
CLN3-201ENST00000333496 MSL3Q8N5Y2 521 aaKnown RBP18.46■□□□□ 0.55
CLN3-201ENST00000333496 ANKLE1Q8NAG6 615 aa18.46■□□□□ 0.55
CLN3-201ENST00000333496 PAWRQ96IZ0 340 aaKnown RBP18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms