RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 FAM107BQ9H098 131 aa16.34■□□□□ 0.21
SSBP3-201ENST00000326956 COL5A2P05997 1499 aaPredicted RBP16.33■□□□□ 0.21
SSBP3-201ENST00000326956 USP17L12C9JPN9 530 aa16.33■□□□□ 0.21
SSBP3-201ENST00000326956 USP17L21D6R901 530 aa16.33■□□□□ 0.21
SSBP3-201ENST00000326956 CHRNDQ07001 517 aa16.33■□□□□ 0.21
SSBP3-201ENST00000326956 CCNI2Q6ZMN8 369 aaPredicted RBP16.33■□□□□ 0.21
SSBP3-201ENST00000326956 FAM114A1Q8IWE2 563 aa16.33■□□□□ 0.21
SSBP3-201ENST00000326956 RETREG2Q8NC44 543 aa16.33■□□□□ 0.21
SSBP3-201ENST00000326956 TSGA10Q9BZW7 698 aa16.33■□□□□ 0.21
SSBP3-201ENST00000326956 PRPF6O94906 941 aaKnown RBP16.33■□□□□ 0.2
SSBP3-201ENST00000326956 PFKFB3Q16875 520 aaPredicted RBP16.33■□□□□ 0.2
SSBP3-201ENST00000326956 FKBP15Q5T1M5 1219 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 SUSD4Q5VX71 490 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 BLIDQ8IZY5 108 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 ZNF507Q8TCN5 953 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 EEF2KMTQ96G04 330 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 RUFY1Q96T51 708 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 BRIP1Q9BX63 1249 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 AGPAT5Q9NUQ2 364 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 MYH2Q9UKX2 1941 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 BCL9LQ86UU0 1499 aa16.33■□□□□ 0.2
SSBP3-201ENST00000326956 A0A0G2JS52 829 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 ZNF185O15231 689 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 TACC1O75410 805 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 IL6STP40189 918 aaPredicted RBP16.32■□□□□ 0.2
SSBP3-201ENST00000326956 PMS1P54277 932 aaKnown RBP16.32■□□□□ 0.2
SSBP3-201ENST00000326956 ZBED6P86452 979 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 CYP27A1Q02318 531 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 C2orf54Q08AI8 447 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 LACRTQ9GZZ8 138 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 BICDL2A1A5D9 508 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 NUTM2BA6NNL0 878 aaPredicted RBP16.32■□□□□ 0.2
SSBP3-201ENST00000326956 NUTM2EB1AL46 878 aaPredicted RBP16.32■□□□□ 0.2
SSBP3-201ENST00000326956 SRGNP10124 158 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 KCNB1Q14721 858 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 FAM47AQ5JRC9 791 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 TSPY2A6NKD2 308 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 MEA1Q16626 185 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 CCDC181Q5TID7 509 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 ZNF662Q6ZS27 426 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 SND1Q7KZF4 910 aaKnown RBP eCLIP16.32■□□□□ 0.2
SSBP3-201ENST00000326956 EFCAB13Q8IY85 973 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 NOC4LQ9BVI4 516 aaKnown RBP16.32■□□□□ 0.2
SSBP3-201ENST00000326956 DEF6Q9H4E7 631 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 FAM184BQ9ULE4 1060 aa16.32■□□□□ 0.2
SSBP3-201ENST00000326956 DCCP43146 1447 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 NMT2O60551 498 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 MYL1P05976 194 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 GYG1P46976 350 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 CAVIN4Q5BKX8 364 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 AMOTL1Q8IY63 956 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 TRIM58Q8NG06 486 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 DHTKD1Q96HY7 919 aaPredicted RBP16.31■□□□□ 0.2
SSBP3-201ENST00000326956 DRC1Q96MC2 740 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 HINFPQ9BQA5 517 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 MATR3P43243 847 aaKnown RBP eCLIP16.31■□□□□ 0.2
SSBP3-201ENST00000326956 CCDC178Q5BJE1 867 aa16.31■□□□□ 0.2
SSBP3-201ENST00000326956 FNBP4Q8N3X1 1017 aaPredicted RBP16.31■□□□□ 0.2
SSBP3-201ENST00000326956 RIOK1Q9BRS2 568 aaKnown RBP16.31■□□□□ 0.2
SSBP3-201ENST00000326956 DISP2A7MBM2 1401 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 EBAG9O00559 213 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 NOP2P46087 812 aaKnown RBP16.3■□□□□ 0.2
SSBP3-201ENST00000326956 GTF2A1P52655 376 aaPredicted RBP16.3■□□□□ 0.2
SSBP3-201ENST00000326956 VAV2P52735 878 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 RASGRP4Q8TDF6 673 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 DUSP10Q9Y6W6 482 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 DOCK2Q92608 1830 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 SHTN1A0MZ66 631 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 PP2D1A8MPX8 630 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 RHOBTB3O94955 611 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 MYBL2P10244 700 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 PDE4DQ08499 809 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 MICALL1Q8N3F8 863 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 GPKOWQ92917 476 aaPredicted RBP eCLIP16.3■□□□□ 0.21e-8■■□□□ 12.3
SSBP3-201ENST00000326956 CNOT6LQ96LI5 555 aaKnown RBP16.3■□□□□ 0.2
SSBP3-201ENST00000326956 KAT14Q9H8E8 782 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 JRKLQ9Y4A0 524 aa16.3■□□□□ 0.2
SSBP3-201ENST00000326956 RCCD1A6NED2 376 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 PDE2AO00408 941 aaPredicted RBP16.29■□□□□ 0.2
SSBP3-201ENST00000326956 OPA1O60313 960 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 GIMAP8Q8ND71 665 aaPredicted RBP16.29■□□□□ 0.2
SSBP3-201ENST00000326956 ALS2CR12Q96Q35 445 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 TCP11L1Q9NUJ3 509 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 LRWD1Q9UFC0 647 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 PCDHA4Q9UN74 947 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 VEGFAP15692 232 aaPredicted RBP16.29■□□□□ 0.2
SSBP3-201ENST00000326956 CCNE1P24864 410 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 KLK7P49862 253 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 ICE2Q659A1 982 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 TTI2Q6NXR4 508 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 P2RX5Q93086 422 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 SLC4A9Q96Q91 983 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 IFIH1Q9BYX4 1025 aaKnown RBP16.29■□□□□ 0.2
SSBP3-201ENST00000326956 A0A087WUV0 522 aaPredicted RBP16.29■□□□□ 0.2
SSBP3-201ENST00000326956 PAFAH1B1P43034 410 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 CCT5P48643 541 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 ASIC1P78348 528 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 PPFIA1Q13136 1202 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 PACS2Q86VP3 889 aa16.29■□□□□ 0.2
SSBP3-201ENST00000326956 CAPS2Q9BXY5 557 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms