RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 CCDC114Q96M63 670 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 VIRMAQ69YN4 1812 aaKnown RBP16.36■□□□□ 0.21
TCOF1-201ENST00000323668 CDHR2Q9BYE9 1310 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 GOLGA8HP0CJ92 632 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 HAUS3Q68CZ6 603 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 MYOCDQ8IZQ8 938 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 ANKRD13CQ8N6S4 541 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 SAMM50Q9Y512 469 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 ITSN1Q15811 1721 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 POTEDQ86YR6 584 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 HINFPQ9BQA5 517 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 GSG1L2A8MUP6 293 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 EPB41P11171 864 aaKnown RBP16.35■□□□□ 0.21
TCOF1-201ENST00000323668 MRFAP1Q9Y605 127 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 UFL1O94874 794 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 ZBED6P86452 979 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 IGDCC4Q8TDY8 1250 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 AK8Q96MA6 479 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 GLT8D2Q9H1C3 349 aa16.35■□□□□ 0.21
TCOF1-201ENST00000323668 ZMYND10O75800 440 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 NCAPH2Q6IBW4 605 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 ANKS4BQ8N8V4 417 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 CRKLP46109 303 aaKnown RBP16.34■□□□□ 0.21
TCOF1-201ENST00000323668 RUFY4Q6ZNE9 571 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 FBXO2Q9UK22 296 aaPredicted RBP16.34■□□□□ 0.21
TCOF1-201ENST00000323668 HPS5Q9UPZ3 1129 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 LOC102724428A0A0B4J2F2 783 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 RNF40O75150 1001 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 HMGB2P26583 209 aaKnown RBP16.34■□□□□ 0.21
TCOF1-201ENST00000323668 SIK1P57059 783 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 RAD51AP2Q09MP3 1159 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 CCDC170Q8IYT3 715 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 BCAS4Q8TDM0 211 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 GDAQ9Y2T3 454 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 GUCY1A2P33402 732 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 GNGT1P63211 74 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 TMTC3Q6ZXV5 915 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 FMNL3Q8IVF7 1028 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 ABHD10Q9NUJ1 306 aa16.34■□□□□ 0.21
TCOF1-201ENST00000323668 GYS2P54840 703 aa16.33■□□□□ 0.21
TCOF1-201ENST00000323668 NT5C3AQ9H0P0 336 aa16.33■□□□□ 0.21
TCOF1-201ENST00000323668 L2HGDHQ9H9P8 463 aa16.33■□□□□ 0.21
TCOF1-201ENST00000323668 SPATA31A3Q5VYP0 1347 aa16.33■□□□□ 0.21
TCOF1-201ENST00000323668 FLOT1O75955 427 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 CCNE1P24864 410 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 SUSD4Q5VX71 490 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 CNBD1Q8NA66 436 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 NSRP1Q9H0G5 558 aaKnown RBP16.33■□□□□ 0.2
TCOF1-201ENST00000323668 STMN4Q9H169 189 aaPredicted RBP16.33■□□□□ 0.2
TCOF1-201ENST00000323668 THAP9Q9H5L6 903 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.33■□□□□ 0.2
TCOF1-201ENST00000323668 DIP2AQ14689 1571 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 SPATA31D1Q6ZQQ2 1576 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 GOLGA8KD6RF30 607 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 GNA14O95837 355 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 CUL4BQ13620 913 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 CAPS2Q9BXY5 557 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 RRP15Q9Y3B9 282 aaKnown RBP16.33■□□□□ 0.2
TCOF1-201ENST00000323668 BUB1O43683 1085 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 MTF1Q14872 753 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 MB21D1Q8N884 522 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 SELENOSQ9BQE4 189 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 PLEKHA4Q9H4M7 779 aa16.33■□□□□ 0.2
TCOF1-201ENST00000323668 MTRF1LQ9UGC7 380 aaKnown RBP16.33■□□□□ 0.2
TCOF1-201ENST00000323668 FMR1Q06787 632 aaKnown RBP eCLIP16.32■□□□□ 0.21e-6■■■■□ 20.4
TCOF1-201ENST00000323668 NAP1L3Q99457 506 aaPredicted RBP16.32■□□□□ 0.2
TCOF1-201ENST00000323668 AGXT2Q9BYV1 514 aa16.32■□□□□ 0.2
TCOF1-201ENST00000323668 CYP27A1Q02318 531 aa16.32■□□□□ 0.2
TCOF1-201ENST00000323668 CCDC174Q6PII3 467 aa16.32■□□□□ 0.2
TCOF1-201ENST00000323668 ENAHQ8N8S7 591 aaPredicted RBP16.32■□□□□ 0.2
TCOF1-201ENST00000323668 IRX2Q9BZI1 471 aaPredicted RBP16.32■□□□□ 0.2
TCOF1-201ENST00000323668 DISC1Q9NRI5 854 aa16.32■□□□□ 0.2
TCOF1-201ENST00000323668 MROH7-TTC4A0A0A0MT08 1334 aa16.32■□□□□ 0.2
TCOF1-201ENST00000323668 MAP3K9P80192 1104 aa16.32■□□□□ 0.2
TCOF1-201ENST00000323668 LSM14BQ9BX40 385 aaKnown RBP16.32■□□□□ 0.2
TCOF1-201ENST00000323668 BRIP1Q9BX63 1249 aa16.32■□□□□ 0.2
TCOF1-201ENST00000323668 PLA2G12BQ9BX93 195 aa16.32■□□□□ 0.2
TCOF1-201ENST00000323668 ST7Q9NRC1 585 aa16.32■□□□□ 0.2
TCOF1-201ENST00000323668 SMIM23A6NLE4 172 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 CALRP27797 417 aaKnown RBP16.31■□□□□ 0.2
TCOF1-201ENST00000323668 VGLL3A8MV65 326 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 PCDHA12Q9UN75 941 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 DNM3Q9UQ16 869 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 CALUO43852 315 aaPredicted RBP16.31■□□□□ 0.2
TCOF1-201ENST00000323668 GUCY2FP51841 1108 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 PEX26Q7Z412 305 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 FNBP4Q8N3X1 1017 aaPredicted RBP16.31■□□□□ 0.2
TCOF1-201ENST00000323668 NHEJ1Q9H9Q4 299 aaPredicted RBP16.31■□□□□ 0.2
TCOF1-201ENST00000323668 GGA1Q9UJY5 639 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 JRKLQ9Y4A0 524 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 TMEM110-MUSTN1A8MSY1 372 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 RIMBP2O15034 1052 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 ARHGAP25P42331 645 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 UIMC1Q96RL1 719 aa16.31■□□□□ 0.2
TCOF1-201ENST00000323668 UTP11Q9Y3A2 253 aaKnown RBP16.31■□□□□ 0.2
TCOF1-201ENST00000323668 A0A1B0GTH6 734 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 FAM26FQ5R3K3 315 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 GBP6Q6ZN66 633 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 TC2NQ8N9U0 490 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 FRMD4BQ9Y2L6 1034 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms