RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 PSMD1Q99460 953 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 SYT17Q9BSW7 474 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 COL3A1P02461 1466 aaPredicted RBP10.36□□□□□ -0.75
PTPRE-202ENST00000306042 POLGP54098 1239 aaPredicted RBP10.36□□□□□ -0.75
PTPRE-202ENST00000306042 SPECC1Q5M775 1068 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 FAM102BQ5T8I3 360 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 FAM173BQ6P4H8 233 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 NEDD1Q8NHV4 660 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 PCDHA4Q9UN74 947 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 RFX7Q2KHR2 1363 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 RGS12O14924 1447 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 SOCS7O14512 581 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 COG2Q14746 738 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 C3orf67Q6ZVT6 689 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 DYMQ7RTS9 669 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 FAM177A1Q8N128 213 aaPredicted RBP10.36□□□□□ -0.75
PTPRE-202ENST00000306042 TRERF1Q96PN7 1200 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 CTAGE1Q96RT6 745 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 MMP19Q99542 508 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 JPH2Q9BR39 696 aaPredicted RBP10.36□□□□□ -0.75
PTPRE-202ENST00000306042 POLR2DO15514 142 aaKnown RBP10.36□□□□□ -0.75
PTPRE-202ENST00000306042 MYSM1Q5VVJ2 828 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 NBPF11Q86T75 865 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 TBC1D10CQ8IV04 446 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 PRMT6Q96LA8 375 aaPredicted RBP10.36□□□□□ -0.75
PTPRE-202ENST00000306042 ADPGKQ9BRR6 497 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 COL14A1Q05707 1796 aaKnown RBP10.36□□□□□ -0.75
PTPRE-202ENST00000306042 HOXA13P31271 388 aaPredicted RBP10.35□□□□□ -0.75
PTPRE-202ENST00000306042 TRPC3Q13507 836 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 Q3C1V9 767 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 MIS18BP1Q6P0N0 1132 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 LPAR1Q92633 364 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 WDR11Q9BZH6 1224 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 GPR75-ASB3A0A0A6YYF3 556 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 PALM3A6NDB9 673 aaPredicted RBP10.35□□□□□ -0.75
PTPRE-202ENST00000306042 ZBTB5O15062 677 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 CTNND1O60716 968 aaKnown RBP10.35□□□□□ -0.75
PTPRE-202ENST00000306042 NR1I2O75469 434 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 EPB41P11171 864 aaKnown RBP10.35□□□□□ -0.75
PTPRE-202ENST00000306042 GCFC2P16383 781 aaKnown RBP10.35□□□□□ -0.75
PTPRE-202ENST00000306042 TM4SF1P30408 202 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 SCRN1Q12765 414 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 STXBP2Q15833 593 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 HSP90AA4PQ58FG1 418 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 RMDN3Q96TC7 470 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 SPDYE2BA6NHP3 402 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 SPDYE6P0CI01 402 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 IFNAR1P17181 557 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 RETREG2Q8NC44 543 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 ACAD9Q9H845 621 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 MRPL44Q9H9J2 332 aaKnown RBP10.35□□□□□ -0.75
PTPRE-202ENST00000306042 KCNH4Q9UQ05 1017 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 CHD2O14647 1828 aaKnown RBP10.35□□□□□ -0.75
PTPRE-202ENST00000306042 STX17P56962 302 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 FAM160A1Q05DH4 1040 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 DCAF17Q5H9S7 520 aaPredicted RBP10.35□□□□□ -0.75
PTPRE-202ENST00000306042 WDR44Q5JSH3 913 aa10.35□□□□□ -0.75
PTPRE-202ENST00000306042 ZNF142P52746 1687 aaPredicted RBP10.35□□□□□ -0.75
PTPRE-202ENST00000306042 SLIT3O75094 1523 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 NMT2O60551 498 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 ERLIN2O94905 339 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 GCNT3O95395 438 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 CYP4A11Q02928 519 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 SMC1BQ8NDV3 1235 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 RASGRP4Q8TDF6 673 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 SLC7A3Q8WY07 619 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 PGBD1Q96JS3 809 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 IWS1Q96ST2 819 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 GRPEL1Q9HAV7 217 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 XRN1Q8IZH2 1706 aaKnown RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 NSUN6Q8TEA1 469 aaKnown RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 SEPT9Q9UHD8 586 aaPredicted RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 NEDD4P46934 1319 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 NWD1Q149M9 1564 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 PRPF3O43395 683 aaKnown RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 ORC4O43929 436 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 GTF2A2P52657 109 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 EP400NLQ6ZTU2 488 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 TXNRD3Q86VQ6 643 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 TBCKQ8TEA7 893 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 GTF3C2Q8WUA4 911 aaPredicted RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 FAM193BQ96PV7 902 aaPredicted RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 INCENPQ9NQS7 918 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 H0YCG3 227 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 WDR46O15213 610 aaKnown RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 CALUO43852 315 aaPredicted RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 USO1O60763 962 aaKnown RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 NECTIN1Q15223 517 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 KLHL40Q2TBA0 621 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 NBPF9Q3BBW0 867 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 AXDND1Q5T1B0 1012 aaPredicted RBP10.34□□□□□ -0.75
PTPRE-202ENST00000306042 ZDHHC15Q96MV8 337 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 PODXL2Q9NZ53 605 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 AKT3Q9Y243 479 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 PPP2R3BQ9Y5P8 575 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 ABCB11O95342 1321 aa10.34□□□□□ -0.75
PTPRE-202ENST00000306042 ALDH1A1P00352 501 aa10.33□□□□□ -0.76
PTPRE-202ENST00000306042 TFDP1Q14186 410 aa10.33□□□□□ -0.76
PTPRE-202ENST00000306042 UBE2SQ16763 222 aa10.33□□□□□ -0.76
PTPRE-202ENST00000306042 GPBP1Q86WP2 473 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms