RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 TUBB4BP68371 445 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 STIM1Q13586 685 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 NEDD9Q14511 834 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 JMYQ8N9B5 988 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 N4BP2L2Q92802 583 aaPredicted RBP12.22□□□□□ -0.45
LSM3-201ENST00000306024 CABS1Q96KC9 395 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 SLC26A6Q9BXS9 759 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 GOLPH3LQ9H4A5 285 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 MARCKSP29966 332 aaPredicted RBP12.21□□□□□ -0.45
LSM3-201ENST00000306024 RESTQ13127 1097 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 CCDC96Q2M329 555 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 NLGN2Q8NFZ4 835 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 C8orf76Q96K31 380 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 SAMM50Q9Y512 469 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 TNKSO95271 1327 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 A0A1B0GUA9 196 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 SPTLC2O15270 562 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 EZRP15311 586 aaKnown RBP12.21□□□□□ -0.45
LSM3-201ENST00000306024 RSBN1LQ6PCB5 846 aaPredicted RBP12.21□□□□□ -0.45
LSM3-201ENST00000306024 FCHSD1Q86WN1 690 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 SUGP1Q8IWZ8 645 aaKnown RBP12.21□□□□□ -0.45
LSM3-201ENST00000306024 KCNG4Q8TDN1 519 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 SCLT1Q96NL6 688 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 RNF181Q9P0P0 153 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 CDC23Q9UJX2 597 aa12.21□□□□□ -0.45
LSM3-201ENST00000306024 SALL1Q9NSC2 1324 aa12.21□□□□□ -0.46
LSM3-201ENST00000306024 GPR75-ASB3A0A0A6YYF3 556 aa12.21□□□□□ -0.46
LSM3-201ENST00000306024 FRMD3A2A2Y4 597 aa12.21□□□□□ -0.46
LSM3-201ENST00000306024 MAP3K9P80192 1104 aa12.21□□□□□ -0.46
LSM3-201ENST00000306024 SSRP1Q08945 709 aaKnown RBP12.21□□□□□ -0.46
LSM3-201ENST00000306024 TSGA10IPQ3SY00 556 aa12.21□□□□□ -0.46
LSM3-201ENST00000306024 CCDC178Q5BJE1 867 aa12.21□□□□□ -0.46
LSM3-201ENST00000306024 SLC44A5Q8NCS7 719 aa12.21□□□□□ -0.46
LSM3-201ENST00000306024 PSMD1Q99460 953 aa12.21□□□□□ -0.46
LSM3-201ENST00000306024 NEDD4P46934 1319 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 HNRNPH1P31943 449 aaKnown RBP12.2□□□□□ -0.46
LSM3-201ENST00000306024 KIF5BP33176 963 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 KCNJ6P48051 423 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 NDUFA8P51970 172 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 KLHL10Q6JEL2 608 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 SERPINB13Q9UIV8 391 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 ZNF202O95125 648 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 BIRC2Q13490 618 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 TTC19Q6DKK2 380 aaPredicted RBP12.2□□□□□ -0.46
LSM3-201ENST00000306024 VAT1LQ9HCJ6 419 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 RCOR1Q9UKL0 485 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 GOLGA6L7A0A1B0GV03 622 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 GNGT1P63211 74 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 CXCL9Q07325 125 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 DPY19L2Q6NUT2 758 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 CERS5Q8N5B7 392 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 ODF2LQ9ULJ1 636 aa12.2□□□□□ -0.46
LSM3-201ENST00000306024 CTDP1Q9Y5B0 961 aaPredicted RBP12.2□□□□□ -0.46
LSM3-201ENST00000306024 ZNF831Q5JPB2 1677 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 TBC1D10BQ4KMP7 808 aaPredicted RBP12.19□□□□□ -0.46
LSM3-201ENST00000306024 HHIPL2Q6UWX4 724 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 B4GALNT4Q76KP1 1039 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 FMNL3Q8IVF7 1028 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 STAG1Q8WVM7 1258 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 ZSCAN10Q96SZ4 725 aaPredicted RBP12.19□□□□□ -0.46
LSM3-201ENST00000306024 RBM28Q9NW13 759 aaKnown RBP12.19□□□□□ -0.46
LSM3-201ENST00000306024 DACH1Q9UI36 760 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 PCDHA7Q9UN72 937 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 ATP2C2O75185 946 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 ECM2O94769 699 aaPredicted RBP12.19□□□□□ -0.46
LSM3-201ENST00000306024 PCP11498 1178 aaKnown RBP12.19□□□□□ -0.46
LSM3-201ENST00000306024 PPP4CP60510 307 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 DACT2Q5SW24 774 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 CDC42EP5Q6NZY7 148 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 WASF1Q92558 559 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 CSRNP1Q96S65 589 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 NAPGQ99747 312 aaPredicted RBP12.19□□□□□ -0.46
LSM3-201ENST00000306024 RTFDC1Q9BY42 306 aaPredicted RBP12.19□□□□□ -0.46
LSM3-201ENST00000306024 TTLL12Q14166 644 aaPredicted RBP12.19□□□□□ -0.46
LSM3-201ENST00000306024 ATRIPQ8WXE1 791 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 CAPZA3Q96KX2 299 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 IRX2Q9BZI1 471 aaPredicted RBP12.19□□□□□ -0.46
LSM3-201ENST00000306024 CLEC11AQ9Y240 323 aa12.19□□□□□ -0.46
LSM3-201ENST00000306024 CUTAO60888 179 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 CYB5R4Q7L1T6 521 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 MB21D2Q8IYB1 491 aaPredicted RBP12.18□□□□□ -0.46
LSM3-201ENST00000306024 CCDC114Q96M63 670 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 FANCLQ9NW38 375 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 BCORQ6W2J9 1755 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 VWA3AA6NCI4 1184 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 STX10O60499 249 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 PDIA3P30101 505 aaKnown RBP12.18□□□□□ -0.46
LSM3-201ENST00000306024 TNFAIP1Q13829 316 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 TOB2Q14106 344 aaPredicted RBP12.18□□□□□ -0.46
LSM3-201ENST00000306024 CEP85LQ5SZL2 805 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 OTUD7BQ6GQQ9 843 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 TOGARAM2Q6ZUX3 1019 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 ZNF654Q8IZM8 581 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 ZNF274Q96GC6 653 aaPredicted RBP12.18□□□□□ -0.46
LSM3-201ENST00000306024 CAPS2Q9BXY5 557 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 FLT1P17948 1338 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 ADD1P35611 737 aaKnown RBP12.18□□□□□ -0.46
LSM3-201ENST00000306024 CDK8P49336 464 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 C12orf60Q5U649 245 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 ATL3Q6DD88 541 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms