RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 FAM149B1Q96BN6 582 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 WRNIP1Q96S55 665 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 PTPN22Q9Y2R2 807 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 GIPC1O14908 333 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 SNX1Q13596 522 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 NOLC1Q14978 699 aaKnown RBP eCLIP8.61□□□□□ -1.03
SCN9A-201ENST00000303354 PCDHB4Q9Y5E5 795 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF202O95125 648 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF394Q53GI3 561 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 TMTC4Q5T4D3 741 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF513Q8N8E2 541 aaPredicted RBP8.61□□□□□ -1.03
SCN9A-201ENST00000303354 SMC6Q96SB8 1091 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 THAP12O43422 761 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 BLIDQ8IZY5 108 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 RSAD2Q8WXG1 361 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 LACTBP83111 547 aaPredicted RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 BRAPQ7Z569 592 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF467Q7Z7K2 595 aaPredicted RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CCDC105Q8IYK2 499 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 SMYD4Q8IYR2 804 aaPredicted RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 EAF2Q96CJ1 260 aaPredicted RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 FGAP02671 866 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 PDE6AP16499 860 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 POLR2FP61218 127 aaKnown RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 SPAG1Q07617 926 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CTTNQ14247 550 aaKnown RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 MICALCLQ6ZW33 695 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 RSRC2Q7L4I2 434 aaKnown RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CPLX4Q7Z7G2 160 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CLIC4Q9Y696 253 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 XDHP47989 1333 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 GOLGA8SH3BPF8 625 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 LCORLQ8N3X6 602 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CCDC89Q8N998 374 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 ANAPC4Q9UJX5 808 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 STAM2O75886 525 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CYP2D6P10635 497 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 SND1Q7KZF4 910 aaKnown RBP eCLIP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 EHBP1Q8NDI1 1231 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CDC26Q8NHZ8 85 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 ELP3Q9H9T3 547 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 IREB2P48200 963 aaKnown RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 ME3Q16798 604 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CDO1Q16878 200 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 LRCH2Q5VUJ6 765 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 FAM160B1Q5W0V3 765 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 DSTYKQ6XUX3 929 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 GDAP1Q8TB36 358 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 SH3RF3Q8TEJ3 882 aaPredicted RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CUL7Q14999 1698 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 POSTNQ15063 836 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 LONRF2Q1L5Z9 754 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 C8orf34Q49A92 452 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 CEP170P1Q96L14 293 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF131P52739 623 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 TFAMQ00059 246 aaKnown RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 DMP1Q13316 513 aaPredicted RBP8.6□□□□□ -1.03
SCN9A-201ENST00000303354 HMGXB3Q12766 1538 aa8.6□□□□□ -1.03
SCN9A-201ENST00000303354 AGRPO00253 132 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 KRT33BQ14525 404 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 DENND2CQ68D51 928 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 GMNNO75496 209 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 ELF1P32519 619 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 MYL5Q02045 173 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 MTERF4Q7Z6M4 381 aaKnown RBP8.59□□□□□ -1.03
SCN9A-201ENST00000303354 DDX12PQ92771 950 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 STK24Q9Y6E0 443 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 RPRD2Q5VT52 1461 aaKnown RBP8.59□□□□□ -1.03
SCN9A-201ENST00000303354 YEATS2Q9ULM3 1422 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 KIF2AO00139 706 aaPredicted RBP8.59□□□□□ -1.03
SCN9A-201ENST00000303354 TNNC1P63316 161 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 FAM178BQ8IXR5 827 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 GRAMD1CQ8IYS0 662 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 DPH5Q9H2P9 285 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 MTRF1LQ9UGC7 380 aaKnown RBP8.59□□□□□ -1.03
SCN9A-201ENST00000303354 SLC12A2P55011 1212 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 RILPL1Q5EBL4 403 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 MCF2L2Q86YR7 1114 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 ATP10AO60312 1499 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 BTBD18B2RXH4 712 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 GUCY2FP51841 1108 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 FANCCQ00597 558 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 FAM83BQ5T0W9 1011 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 PIK3R2O00459 728 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 P4HA1P13674 534 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 CCNA1P78396 465 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 METTL23Q86XA0 190 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 ATP8A2Q9NTI2 1148 aa8.59□□□□□ -1.03
SCN9A-201ENST00000303354 ECE2O60344 883 aa8.59□□□□□ -1.04
SCN9A-201ENST00000303354 CCND2P30279 289 aa8.59□□□□□ -1.04
SCN9A-201ENST00000303354 ATICP31939 592 aa8.59□□□□□ -1.04
SCN9A-201ENST00000303354 MIS18BP1Q6P0N0 1132 aa8.59□□□□□ -1.04
SCN9A-201ENST00000303354 PALM2Q8IXS6 379 aa8.59□□□□□ -1.04
SCN9A-201ENST00000303354 CCNYQ8ND76 341 aa8.59□□□□□ -1.04
SCN9A-201ENST00000303354 PIDD1Q9HB75 910 aa8.59□□□□□ -1.04
SCN9A-201ENST00000303354 GDAQ9Y2T3 454 aa8.59□□□□□ -1.04
SCN9A-201ENST00000303354 UTP11Q9Y3A2 253 aaKnown RBP8.59□□□□□ -1.04
SCN9A-201ENST00000303354 HSPD1P10809 573 aaKnown RBP8.58□□□□□ -1.04
SCN9A-201ENST00000303354 BCRP11274 1271 aa8.58□□□□□ -1.04
SCN9A-201ENST00000303354 RFX6Q8HWS3 928 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms