RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 TFAP4Q01664 338 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 MTMR2Q13614 643 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 RAB3GAP1Q15042 981 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 CST9Q5W186 159 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 MFSD6Q6ZSS7 791 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 RALYLQ86SE5 291 aaKnown RBP7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 AMOTL1Q8IY63 956 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 MEIOBQ8N635 442 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 SMC1BQ8NDV3 1235 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 ACER1Q8TDN7 264 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 NANOS1Q8WY41 292 aaKnown RBP7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 FOXJ1Q92949 421 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 TSEN34Q9BSV6 310 aaKnown RBP7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 MKNK2Q9HBH9 465 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 GBA2Q9HCG7 927 aaPredicted RBP7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 PI4KBQ9UBF8 816 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 DNMT3LQ9UJW3 386 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 PPP2R3BQ9Y5P8 575 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 PLIN4Q96Q06 1357 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 TRPM7Q96QT4 1865 aa7.66□□□□□ -1.18
DEPDC4-201ENST00000299185 IGKV6D-41A0A0C4DH26 115 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 MOXD2PA6NHM9 499 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 TSPY2A6NKD2 308 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 SH2B2O14492 632 aaPredicted RBP7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 ORC4O43929 436 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 TNKSO95271 1327 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 NR3C2P08235 984 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 ECE1P42892 770 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 MMP14P50281 582 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 ICA1Q05084 483 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 GRM1Q13255 1194 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 ABCB5Q2M3G0 1257 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 CERKLQ49MI3 558 aaPredicted RBP7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 KIAA1755Q5JYT7 1200 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 DCAF15Q66K64 600 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 PHIPQ8WWQ0 1821 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 CEP95Q96GE4 821 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 NEK1Q96PY6 1258 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 NUP88Q99567 741 aaPredicted RBP7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 COL25A1Q9BXS0 654 aaPredicted RBP7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 DHX36Q9H2U1 1008 aaKnown RBP7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 IL17RBQ9NRM6 502 aa7.65□□□□□ -1.18
DEPDC4-201ENST00000299185 A0A1W2PRG0 241 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 FGRP09769 529 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 TSPY3P0CV98 308 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 TSPY8P0CW00 308 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 RPS6KB1P23443 525 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 IRS1P35568 1242 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 CAP2P40123 477 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 GRM5P41594 1212 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 RBM25P49756 843 aaKnown RBP7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 MARSP56192 900 aaKnown RBP7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 PDE4BQ07343 736 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 APOBRQ0VD83 1088 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 ST3GAL1Q11201 340 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 TOB2Q14106 344 aaPredicted RBP7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 RNF20Q5VTR2 975 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 ZNF385CQ66K41 422 aaPredicted RBP7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 RCSD1Q6JBY9 416 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 TATDN1Q6P1N9 297 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 BLOC1S2Q6QNY1 142 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 Q6ZUG5 572 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 METTL16Q86W50 562 aaKnown RBP7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 SIAH1Q8IUQ4 282 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 CCDC144CPQ8IYA2 1237 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 SCYL3Q8IZE3 742 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 ENAHQ8N8S7 591 aaPredicted RBP7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 NCOA7Q8NI08 942 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 SCARF2Q96GP6 870 aaPredicted RBP7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 ZIC5Q96T25 663 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 CPVLQ9H3G5 476 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 PRDM10Q9NQV6 1147 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 ZSWIM5Q9P217 1185 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 SWAP70Q9UH65 585 aa7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 HERC5Q9UII4 1024 aaKnown RBP7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 NAP1L2Q9ULW6 460 aaPredicted RBP7.64□□□□□ -1.19
DEPDC4-201ENST00000299185 FRMPD2Q68DX3 1309 aaPredicted RBP7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 TRIM75PA6NK02 468 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 IFIT3O14879 490 aaKnown RBP7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 RAD21O60216 631 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 SLC3A2P08195 630 aaKnown RBP7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 EEF2P13639 858 aaKnown RBP7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 ZKSCAN1P17029 563 aaPredicted RBP7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 SSTR3P32745 418 aaPredicted RBP7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 NF2P35240 595 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 IREB2P48200 963 aaKnown RBP7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 RGS19P49795 217 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 AK2P54819 239 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 HUNKP57058 714 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 MAP3K10Q02779 954 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 STK3Q13188 491 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 AGERQ15109 404 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 SEC23AQ15436 765 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 SUPT20HL1Q3ZLR7 823 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 TMEM67Q5HYA8 995 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 NOL9Q5SY16 702 aaKnown RBP7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 LYPD8Q6UX82 237 aa7.63□□□□□ -1.19
DEPDC4-201ENST00000299185 RUFY3Q7L099 469 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms