RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 NKRFO15226 690 aaKnown RBP eCLIP30.79■■■□□ 2.521e-6■□□□□ 10.1
CBX4-201ENST00000269397 STIM1Q13586 685 aa30.79■■■□□ 2.52
CBX4-201ENST00000269397 LRRC15Q8TF66 581 aa30.79■■■□□ 2.52
CBX4-201ENST00000269397 BRIP1Q9BX63 1249 aa30.79■■■□□ 2.52
CBX4-201ENST00000269397 NHEJ1Q9H9Q4 299 aaPredicted RBP30.79■■■□□ 2.52
CBX4-201ENST00000269397 RASSF10A6NK89 507 aa30.79■■■□□ 2.52
CBX4-201ENST00000269397 KRT86O43790 486 aa30.79■■■□□ 2.52
CBX4-201ENST00000269397 BLIDQ8IZY5 108 aa30.79■■■□□ 2.52
CBX4-201ENST00000269397 SMCR8Q8TEV9 937 aaPredicted RBP30.79■■■□□ 2.52
CBX4-201ENST00000269397 COG1Q8WTW3 980 aa30.79■■■□□ 2.52
CBX4-201ENST00000269397 TUBGCP2Q9BSJ2 902 aa30.79■■■□□ 2.52
CBX4-201ENST00000269397 ZC3H4Q9UPT8 1303 aaKnown RBP30.78■■■□□ 2.52
CBX4-201ENST00000269397 KLRC4O43908 158 aa30.78■■■□□ 2.52
CBX4-201ENST00000269397 AARSP49588 968 aaKnown RBP eCLIP30.78■■■□□ 2.522e-6■■■■□ 23
CBX4-201ENST00000269397 KRT83P78385 493 aa30.78■■■□□ 2.52
CBX4-201ENST00000269397 NIP7Q9Y221 180 aaKnown RBP eCLIP30.78■■■□□ 2.52
CBX4-201ENST00000269397 A0A1W2PQC6 194 aa30.78■■■□□ 2.52
CBX4-201ENST00000269397 EEF1GP26641 437 aaKnown RBP30.78■■■□□ 2.52
CBX4-201ENST00000269397 HSPA2P54652 639 aa30.78■■■□□ 2.52
CBX4-201ENST00000269397 MAP9Q49MG5 647 aa30.78■■■□□ 2.52
CBX4-201ENST00000269397 VIPAS39Q9H9C1 493 aa30.78■■■□□ 2.52
CBX4-201ENST00000269397 EIF3CLB5ME19 914 aaKnown RBP30.77■■■□□ 2.52
CBX4-201ENST00000269397 IDEP14735 1019 aa30.77■■■□□ 2.52
CBX4-201ENST00000269397 ARL6IP4Q66PJ3 421 aaKnown RBP30.77■■■□□ 2.52
CBX4-201ENST00000269397 CSGALNACT2Q8N6G5 542 aa30.77■■■□□ 2.52
CBX4-201ENST00000269397 EIF3CQ99613 913 aaKnown RBP30.77■■■□□ 2.52
CBX4-201ENST00000269397 PSMA7O14818 248 aa30.77■■■□□ 2.52
CBX4-201ENST00000269397 TYW1BQ6NUM6 668 aa30.77■■■□□ 2.52
CBX4-201ENST00000269397 DTHD1Q6ZMT9 781 aa30.77■■■□□ 2.52
CBX4-201ENST00000269397 KRT26Q7Z3Y9 468 aa30.77■■■□□ 2.52
CBX4-201ENST00000269397 DRC1Q96MC2 740 aa30.77■■■□□ 2.52
CBX4-201ENST00000269397 TBC1D8BQ0IIM8 1120 aa30.76■■■□□ 2.52
CBX4-201ENST00000269397 SELENOOQ9BVL4 669 aa30.76■■■□□ 2.52
CBX4-201ENST00000269397 BTG4Q9NY30 223 aa30.76■■■□□ 2.52
CBX4-201ENST00000269397 UBA7P41226 1012 aa30.76■■■□□ 2.51
CBX4-201ENST00000269397 TTI2Q6NXR4 508 aa30.76■■■□□ 2.51
CBX4-201ENST00000269397 THAP9Q9H5L6 903 aa30.76■■■□□ 2.51
CBX4-201ENST00000269397 EXOC1Q9NV70 894 aa30.76■■■□□ 2.51
CBX4-201ENST00000269397 MKRN1Q9UHC7 482 aaKnown RBP30.76■■■□□ 2.51
CBX4-201ENST00000269397 TSPY2A6NKD2 308 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 FGRP09769 529 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 DNM2P50570 870 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 STAG2Q8N3U4 1231 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 DUSP9Q99956 384 aaKnown RBP30.75■■■□□ 2.51
CBX4-201ENST00000269397 CRACR2AQ9BSW2 395 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 DDX52Q9Y2R4 599 aaKnown RBP eCLIP30.75■■■□□ 2.51
CBX4-201ENST00000269397 NHSL1Q5SYE7 1610 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 PLEKP08567 350 aaPredicted RBP30.75■■■□□ 2.51
CBX4-201ENST00000269397 SRGNP10124 158 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 CYLC1P35663 651 aaPredicted RBP30.75■■■□□ 2.51
CBX4-201ENST00000269397 MEA1Q16626 185 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 INF2Q27J81 1249 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 PLCD3Q8N3E9 789 aa30.75■■■□□ 2.51
CBX4-201ENST00000269397 ZNHIT6Q9NWK9 470 aaKnown RBP30.75■■■□□ 2.51
CBX4-201ENST00000269397 ZNF804BA4D1E1 1349 aa30.74■■■□□ 2.51
CBX4-201ENST00000269397 IPO7O95373 1038 aaKnown RBP30.74■■■□□ 2.51
CBX4-201ENST00000269397 EZH2Q15910 746 aaKnown RBP30.74■■■□□ 2.51
CBX4-201ENST00000269397 SMARCC1Q92922 1105 aaPredicted RBP30.74■■■□□ 2.51
CBX4-201ENST00000269397 TTYH3Q9C0H2 523 aa30.74■■■□□ 2.51
CBX4-201ENST00000269397 AGPSO00116 658 aa30.73■■■□□ 2.51
CBX4-201ENST00000269397 CKAP4Q07065 602 aaKnown RBP30.73■■■□□ 2.51
CBX4-201ENST00000269397 CCNI2Q6ZMN8 369 aaPredicted RBP30.73■■■□□ 2.51
CBX4-201ENST00000269397 JAG2Q9Y219 1238 aa30.73■■■□□ 2.51
CBX4-201ENST00000269397 CACNA1SQ13698 1873 aa30.73■■■□□ 2.51
CBX4-201ENST00000269397 CCDC194A0A1B0GVG4 234 aa30.73■■■□□ 2.51
CBX4-201ENST00000269397 GIMAP8Q8ND71 665 aaPredicted RBP30.73■■■□□ 2.51
CBX4-201ENST00000269397 HDAC7Q8WUI4 952 aa30.73■■■□□ 2.51
CBX4-201ENST00000269397 PSMB7Q99436 277 aa30.73■■■□□ 2.51
CBX4-201ENST00000269397 RABEP2Q9H5N1 569 aa30.73■■■□□ 2.51
CBX4-201ENST00000269397 LRWD1Q9UFC0 647 aa30.73■■■□□ 2.51
CBX4-201ENST00000269397 NTSR2O95665 410 aa30.72■■■□□ 2.51
CBX4-201ENST00000269397 MCM3P25205 808 aa30.72■■■□□ 2.51
CBX4-201ENST00000269397 DCP1AQ9NPI6 582 aaPredicted RBP30.72■■■□□ 2.51
CBX4-201ENST00000269397 TARSL2A2RTX5 802 aaKnown RBP30.72■■■□□ 2.51
CBX4-201ENST00000269397 CCDC178Q5BJE1 867 aa30.72■■■□□ 2.51
CBX4-201ENST00000269397 ANKRD40Q6AI12 368 aa30.72■■■□□ 2.51
CBX4-201ENST00000269397 RCSD1Q6JBY9 416 aa30.72■■■□□ 2.51
CBX4-201ENST00000269397 INTS5Q6P9B9 1019 aaKnown RBP30.72■■■□□ 2.51
CBX4-201ENST00000269397 C3orf67Q6ZVT6 689 aa30.72■■■□□ 2.51
CBX4-201ENST00000269397 HPS3Q969F9 1004 aa30.72■■■□□ 2.51
CBX4-201ENST00000269397 ZNF263O14978 683 aa30.71■■■□□ 2.51
CBX4-201ENST00000269397 KLRK1P26718 216 aa30.71■■■□□ 2.51
CBX4-201ENST00000269397 MATR3P43243 847 aaKnown RBP eCLIP30.71■■■□□ 2.51
CBX4-201ENST00000269397 EHBP1Q8NDI1 1231 aa30.71■■■□□ 2.51
CBX4-201ENST00000269397 CNOT6LQ96LI5 555 aaKnown RBP30.71■■■□□ 2.51
CBX4-201ENST00000269397 PCDHA4Q9UN74 947 aa30.71■■■□□ 2.51
CBX4-201ENST00000269397 RHOBTB3O94955 611 aa30.71■■■□□ 2.51
CBX4-201ENST00000269397 CALML3P27482 149 aa30.71■■■□□ 2.51
CBX4-201ENST00000269397 MTIF2P46199 727 aaKnown RBP30.71■■■□□ 2.51
CBX4-201ENST00000269397 KCNB1Q14721 858 aa30.71■■■□□ 2.51
CBX4-201ENST00000269397 SMARCAL1Q9NZC9 954 aa30.7■■■□□ 2.51
CBX4-201ENST00000269397 FCER1AP12319 257 aa30.7■■■□□ 2.51
CBX4-201ENST00000269397 MECOMQ03112 1051 aa30.7■■■□□ 2.51
CBX4-201ENST00000269397 STK4Q13043 487 aa30.7■■■□□ 2.51
CBX4-201ENST00000269397 CCDC96Q2M329 555 aa30.7■■■□□ 2.51
CBX4-201ENST00000269397 CAVIN4Q5BKX8 364 aa30.7■■■□□ 2.51
CBX4-201ENST00000269397 FAM84BQ96KN1 310 aaPredicted RBP30.7■■■□□ 2.51
CBX4-201ENST00000269397 KBTBD4Q9NVX7 518 aa30.7■■■□□ 2.51
CBX4-201ENST00000269397 PPFIA4O75335 1185 aa30.7■■■□□ 2.5
CBX4-201ENST00000269397 CRKLP46109 303 aaKnown RBP30.7■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms