RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 OAZ1P54368 228 aa11.53□□□□□ -0.56
VPS41-201ENST00000265745 PPP4R3BQ5MIZ7 849 aa11.53□□□□□ -0.56
VPS41-201ENST00000265745 B4GALNT3Q6L9W6 998 aa11.53□□□□□ -0.56
VPS41-201ENST00000265745 CHD1LQ86WJ1 897 aa11.53□□□□□ -0.56
VPS41-201ENST00000265745 MSL3Q8N5Y2 521 aaKnown RBP11.53□□□□□ -0.56
VPS41-201ENST00000265745 DDX11Q96FC9 970 aa11.53□□□□□ -0.56
VPS41-201ENST00000265745 GMCL1Q96IK5 515 aa11.53□□□□□ -0.56
VPS41-201ENST00000265745 TSPY2A6NKD2 308 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 TMEM232C9JQI7 657 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 SOX1O00570 391 aaPredicted RBP11.52□□□□□ -0.57
VPS41-201ENST00000265745 NMT2O60551 498 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 ZMYND10O75800 440 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 FDX1P10109 184 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 HSPD1P10809 573 aaKnown RBP11.52□□□□□ -0.57
VPS41-201ENST00000265745 SLC1A4P43007 532 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 SLC4A3P48751 1232 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 NUCB1Q02818 461 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 CAMK2BQ13554 666 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 LRRC41Q15345 812 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 MAMDC4Q6UXC1 1216 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 SLC39A5Q6ZMH5 540 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 PLEKHM2Q8IWE5 1019 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 CHST13Q8NET6 341 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 EXOC6Q8TAG9 804 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 CHURC1Q8WUH1 139 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 STAG1Q8WVM7 1258 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 OSBPL3Q9H4L5 887 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 STX8Q9UNK0 236 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 CNPY2Q9Y2B0 182 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 CTDP1Q9Y5B0 961 aaPredicted RBP11.52□□□□□ -0.57
VPS41-201ENST00000265745 LAMA3Q16787 3333 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 SZT2Q5T011 3432 aa11.52□□□□□ -0.57
VPS41-201ENST00000265745 RLFQ13129 1914 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 KBTBD13C9JR72 458 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 RANBP6O60518 1105 aaKnown RBP11.51□□□□□ -0.57
VPS41-201ENST00000265745 PLA2G6O60733 806 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 SNAI1O95863 264 aaPredicted RBP11.51□□□□□ -0.57
VPS41-201ENST00000265745 RARBP10826 455 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 ADCYAP1R1P41586 468 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 STAT2P52630 851 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 NMIQ13287 307 aaPredicted RBP11.51□□□□□ -0.57
VPS41-201ENST00000265745 RCSD1Q6JBY9 416 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 ZNF589Q86UQ0 364 aaPredicted RBP11.51□□□□□ -0.57
VPS41-201ENST00000265745 FAM160B2Q86V87 743 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 UBE2OQ9C0C9 1292 aaKnown RBP11.51□□□□□ -0.57
VPS41-201ENST00000265745 XPNPEP3Q9NQH7 507 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 FBXO40Q9UH90 709 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 TRPC6Q9Y210 931 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 SYNGAP1Q96PV0 1343 aa11.51□□□□□ -0.57
VPS41-201ENST00000265745 BAZ2AQ9UIF9 1905 aaKnown RBP11.5□□□□□ -0.57
VPS41-201ENST00000265745 TRIM6-TRIM34B2RNG4 842 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 PGK1P00558 417 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 SDSP20132 328 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 RTP1P59025 263 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 SNX17Q15036 470 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 LRIT3Q3SXY7 679 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 C1orf53Q5VUE5 145 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 KCTD1Q719H9 257 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 TDHQ8IZJ6 230 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 ANKRD35Q8N283 1001 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 RILPL2Q969X0 211 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 FERMT2Q96AC1 680 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 CHMP4CQ96CF2 233 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 LRCH3Q96II8 777 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 FGD4Q96M96 766 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 AGBL1Q96MI9 1066 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 TCP11L1Q9NUJ3 509 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 PHF24Q9UPV7 400 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 ZNF536O15090 1300 aa11.5□□□□□ -0.57
VPS41-201ENST00000265745 AKR1A1P14550 325 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 MDM2Q00987 491 aaPredicted RBP11.49□□□□□ -0.57
VPS41-201ENST00000265745 IKQ13123 557 aaPredicted RBP11.49□□□□□ -0.57
VPS41-201ENST00000265745 RRP12Q5JTH9 1297 aaKnown RBP11.49□□□□□ -0.57
VPS41-201ENST00000265745 RNF180Q86T96 592 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 TOMM22Q9NS69 142 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 HOMER2Q9NSB8 354 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 FAM184BQ9ULE4 1060 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 PRR12Q9ULL5 1215 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 ISY1Q9ULR0 285 aaKnown RBP11.49□□□□□ -0.57
VPS41-201ENST00000265745 ATP11BQ9Y2G3 1177 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 ZMYM6O95789 1325 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 CCDC171Q6TFL3 1326 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 A0A0G2JMZ2 1700 aa11.49□□□□□ -0.57
VPS41-201ENST00000265745 ADAMTS4O75173 837 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 PCP11498 1178 aaKnown RBP11.48□□□□□ -0.57
VPS41-201ENST00000265745 SNAP25P60880 206 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 HAND2P61296 217 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 CNTN2Q02246 1040 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 ACVR2BQ13705 512 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 TKFCQ3LXA3 575 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 TRIM60Q495X7 471 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 GPR153Q6NV75 609 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 RASGRP2Q7LDG7 609 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 FAM133AQ8N9E0 248 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 DCAF4Q8WV16 495 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 LENG1Q96BZ8 264 aaPredicted RBP11.48□□□□□ -0.57
VPS41-201ENST00000265745 LBHD1Q9BQE6 289 aaPredicted RBP11.48□□□□□ -0.57
VPS41-201ENST00000265745 TMEM47Q9BQJ4 181 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 ABHD16BQ9H3Z7 469 aa11.48□□□□□ -0.57
VPS41-201ENST00000265745 ACAD9Q9H845 621 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms