RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 KCNJ18B7U540 433 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 GTF2IP78347 998 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 KCNJ12Q14500 433 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 MAEAQ7L5Y9 396 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 RSPH3Q86UC2 560 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 FANCLQ9NW38 375 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 SAR1BQ9Y6B6 198 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 ETF1P62495 437 aaKnown RBP21.04■□□□□ 0.96
UPF1-201ENST00000262803 FBXO18Q8NFZ0 1043 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 RSRC1Q96IZ7 334 aaKnown RBP21.04■□□□□ 0.96
UPF1-201ENST00000262803 FAM193BQ96PV7 902 aaPredicted RBP21.04■□□□□ 0.96
UPF1-201ENST00000262803 RAB20Q9NX57 234 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 CIAO1O76071 339 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 C1orf112Q9NSG2 853 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 LARSQ9P2J5 1176 aaKnown RBP21.04■□□□□ 0.96
UPF1-201ENST00000262803 HESX1Q9UBX0 185 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 DBNLQ9UJU6 430 aaKnown RBP21.04■□□□□ 0.96
UPF1-201ENST00000262803 LTKP29376 864 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 ZNF215Q9UL58 517 aaPredicted RBP21.03■□□□□ 0.96
UPF1-201ENST00000262803 KDM5CP41229 1560 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 ARHGEF5Q12774 1597 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 MED23Q9ULK4 1368 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 CERKLQ49MI3 558 aaPredicted RBP21.03■□□□□ 0.96
UPF1-201ENST00000262803 POTEDQ86YR6 584 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 SDR42E1Q8WUS8 393 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 NCAPGQ9BPX3 1015 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 TRPC5Q9UL62 973 aaPredicted RBP21.03■□□□□ 0.96
UPF1-201ENST00000262803 BPIFB4P59827 614 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 PROCA1Q8NCQ7 364 aaPredicted RBP21.03■□□□□ 0.96
UPF1-201ENST00000262803 CLIC6Q96NY7 704 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 MAP3K21Q5TCX8 1036 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 NEK8Q86SG6 692 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 TPH2Q8IWU9 490 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 RABEP2Q9H5N1 569 aa21.03■□□□□ 0.96
UPF1-201ENST00000262803 MORC3Q14149 939 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 GPATCH4Q5T3I0 446 aaKnown RBP21.02■□□□□ 0.96
UPF1-201ENST00000262803 PPP2R2CQ9Y2T4 447 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 EIF3CLB5ME19 914 aaKnown RBP21.02■□□□□ 0.96
UPF1-201ENST00000262803 TCP10Q12799 353 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 UBE3CQ15386 1083 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 TMED8Q6PL24 325 aaPredicted RBP21.02■□□□□ 0.96
UPF1-201ENST00000262803 SDCCAG8Q86SQ7 713 aaPredicted RBP21.02■□□□□ 0.96
UPF1-201ENST00000262803 GPBP1Q86WP2 473 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 EIF3CQ99613 913 aaKnown RBP21.02■□□□□ 0.96
UPF1-201ENST00000262803 CLIC4Q9Y696 253 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 PPFIA1Q13136 1202 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 PROSER3Q2NL68 480 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 CCDC105Q8IYK2 499 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 PBRM1Q86U86 1689 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 XDHP47989 1333 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 OATP04181 439 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 GBP6Q6ZN66 633 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 NBPF3Q9H094 633 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 RIC8AQ9NPQ8 531 aa21.02■□□□□ 0.96
UPF1-201ENST00000262803 MLH3Q9UHC1 1453 aa21.02■□□□□ 0.95
UPF1-201ENST00000262803 PPFIA4O75335 1185 aa21.02■□□□□ 0.95
UPF1-201ENST00000262803 OR52Z1P0C646 297 aa21.02■□□□□ 0.95
UPF1-201ENST00000262803 TRIM50Q86XT4 487 aa21.02■□□□□ 0.95
UPF1-201ENST00000262803 TRIM58Q8NG06 486 aa21.02■□□□□ 0.95
UPF1-201ENST00000262803 TLR7Q9NYK1 1049 aaKnown RBP21.02■□□□□ 0.95
UPF1-201ENST00000262803 AFG3L2Q9Y4W6 797 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 STAM2O75886 525 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 OSBPP22059 807 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 GYG1P46976 350 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 ICA1Q05084 483 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 CC2D2BQ6DHV5 1058 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 BCAMP50895 628 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 WHAMMP3Q1A5X7 153 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 ASPRV1Q53RT3 343 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 IPO11Q9UI26 975 aaKnown RBP21.01■□□□□ 0.95
UPF1-201ENST00000262803 MAP3K15Q6ZN16 1313 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 SYNMO15061 1565 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 A0A1W2PQ27 194 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 A0A1W2PQ64 194 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 A0A1W2PQD8 194 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 LONP1P36776 959 aaKnown RBP21.01■□□□□ 0.95
UPF1-201ENST00000262803 TRAPPC10P48553 1259 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 CUL4AQ13619 759 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 SEPT6Q14141 434 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 BRD3Q15059 726 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 CEP85LQ5SZL2 805 aa21.01■□□□□ 0.95
UPF1-201ENST00000262803 ZNF772Q68DY9 489 aaPredicted RBP21.01■□□□□ 0.95
UPF1-201ENST00000262803 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21■□□□□ 0.95
UPF1-201ENST00000262803 INPP5BP32019 993 aa21■□□□□ 0.95
UPF1-201ENST00000262803 GDAP1L1Q96MZ0 367 aa21■□□□□ 0.95
UPF1-201ENST00000262803 MED10Q9BTT4 135 aa21■□□□□ 0.95
UPF1-201ENST00000262803 PPANQ9NQ55 473 aaKnown RBP21■□□□□ 0.95
UPF1-201ENST00000262803 MBD5Q9P267 1494 aa21■□□□□ 0.95
UPF1-201ENST00000262803 CYP21A2P08686 494 aa21■□□□□ 0.95
UPF1-201ENST00000262803 DMP1Q13316 513 aaPredicted RBP21■□□□□ 0.95
UPF1-201ENST00000262803 FAM102BQ5T8I3 360 aa21■□□□□ 0.95
UPF1-201ENST00000262803 TYW1Q9NV66 732 aaKnown RBP21■□□□□ 0.95
UPF1-201ENST00000262803 USTQ9Y2C2 406 aa21■□□□□ 0.95
UPF1-201ENST00000262803 RSAD2Q8WXG1 361 aa21■□□□□ 0.95
UPF1-201ENST00000262803 TRIM11Q96F44 468 aa21■□□□□ 0.95
UPF1-201ENST00000262803 CASQ2O14958 399 aaPredicted RBP21■□□□□ 0.95
UPF1-201ENST00000262803 IRX4P78413 519 aa21■□□□□ 0.95
UPF1-201ENST00000262803 KRT81Q14533 505 aa21■□□□□ 0.95
UPF1-201ENST00000262803 CDHR1Q96JP9 859 aa21■□□□□ 0.95
UPF1-201ENST00000262803 EAPPQ56P03 285 aaPredicted RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms