RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ANGEL2Q5VTE6 544 aaKnown RBP13.03□□□□□ -0.32
VPS4A-201ENST00000254950 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.03□□□□□ -0.32
VPS4A-201ENST00000254950 SYCP3Q8IZU3 236 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 UIMC1Q96RL1 719 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 NT5C3AQ9H0P0 336 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 ZBTB21Q9ULJ3 1066 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 ZHX2Q9Y6X8 837 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 ADAMTS7Q9UKP4 1686 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 BACH1O14867 736 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 FAM13AO94988 1023 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 STX17P56962 302 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 GSDMDP57764 484 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 KRT26Q7Z3Y9 468 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 TMC6Q7Z403 805 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 SYMPKQ92797 1274 aaKnown RBP13.03□□□□□ -0.32
VPS4A-201ENST00000254950 SRPRBQ9Y5M8 271 aaKnown RBP13.03□□□□□ -0.32
VPS4A-201ENST00000254950 GAS7O60861 476 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 NDUFB10O96000 172 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 PDHBP11177 359 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 DDIT3P35638 169 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 MATR3P43243 847 aaKnown RBP eCLIP13.03□□□□□ -0.32
VPS4A-201ENST00000254950 SP4Q02446 784 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 QRICH1Q2TAL8 776 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 ADGRF4Q8IZF3 695 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 STAMQ92783 540 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 PGBD1Q96JS3 809 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 IDI2Q9BXS1 227 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 DEFB129Q9H1M3 183 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 GGA3Q9NZ52 723 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 FEM1BQ9UK73 627 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 BICDL2A1A5D9 508 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 UBE2SQ16763 222 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 HSP90AA4PQ58FG1 418 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 CTAGE1Q96RT6 745 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 DNM3Q9UQ16 869 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 CHMP4BP1P59074 171 aa13.02□□□□□ -0.32
VPS4A-201ENST00000254950 PDE4DQ08499 809 aa13.02□□□□□ -0.32
VPS4A-201ENST00000254950 PLA2G4DQ86XP0 818 aa13.02□□□□□ -0.32
VPS4A-201ENST00000254950 ERCC4Q92889 916 aaPredicted RBP13.02□□□□□ -0.32
VPS4A-201ENST00000254950 AK8Q96MA6 479 aa13.02□□□□□ -0.32
VPS4A-201ENST00000254950 KDM3AQ9Y4C1 1321 aa13.02□□□□□ -0.32
VPS4A-201ENST00000254950 DDTLA6NHG4 134 aaPredicted RBP13.02□□□□□ -0.33
VPS4A-201ENST00000254950 PNOCQ13519 176 aa13.02□□□□□ -0.33
VPS4A-201ENST00000254950 ARHGEF16Q5VV41 709 aa13.02□□□□□ -0.33
VPS4A-201ENST00000254950 ARL6IP4Q66PJ3 421 aaKnown RBP13.02□□□□□ -0.33
VPS4A-201ENST00000254950 NLRX1Q86UT6 975 aa13.02□□□□□ -0.33
VPS4A-201ENST00000254950 ZNF397Q8NF99 534 aaPredicted RBP13.02□□□□□ -0.33
VPS4A-201ENST00000254950 TIGD1Q96MW7 591 aa13.02□□□□□ -0.33
VPS4A-201ENST00000254950 DEF6Q9H4E7 631 aa13.02□□□□□ -0.33
VPS4A-201ENST00000254950 CBX8Q9HC52 389 aa13.02□□□□□ -0.33
VPS4A-201ENST00000254950 DDX4Q9NQI0 724 aaKnown RBP13.02□□□□□ -0.33
VPS4A-201ENST00000254950 CNTNAP5Q8WYK1 1306 aa13.02□□□□□ -0.33
VPS4A-201ENST00000254950 DKC1O60832 514 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS4A-201ENST00000254950 VIL1P09327 827 aaKnown RBP13.01□□□□□ -0.33
VPS4A-201ENST00000254950 PTPREP23469 700 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 SMARCA1P28370 1054 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 SNAP25P60880 206 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 AP3B2Q13367 1082 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 TTBK2Q6IQ55 1244 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 CNNM4Q6P4Q7 775 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 ANKRD35Q8N283 1001 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 ANO3Q9BYT9 981 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 KIF28PB7ZC32 967 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 FAM83AQ86UY5 434 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 SCLT1Q96NL6 688 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 SLF1Q9BQI6 1058 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 U2AF2P26368 475 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS4A-201ENST00000254950 PRPF38AQ8NAV1 312 aaKnown RBP13.01□□□□□ -0.33
VPS4A-201ENST00000254950 LUC7LQ9NQ29 371 aaKnown RBP13.01□□□□□ -0.33
VPS4A-201ENST00000254950 HACL1Q9UJ83 578 aa13.01□□□□□ -0.33
VPS4A-201ENST00000254950 SIPA1L3O60292 1781 aaPredicted RBP13□□□□□ -0.33
VPS4A-201ENST00000254950 DDX39AO00148 427 aaKnown RBP13□□□□□ -0.33
VPS4A-201ENST00000254950 NAP1L1P55209 391 aaKnown RBP13□□□□□ -0.33
VPS4A-201ENST00000254950 GNPTABQ3T906 1256 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 TCERG1LQ5VWI1 586 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 NBPF9Q3BBW0 867 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 SPDYE2Q495Y8 402 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 PHF20Q9BVI0 1012 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 PDGFDQ9GZP0 370 aaPredicted RBP13□□□□□ -0.33
VPS4A-201ENST00000254950 NBPF3Q9H094 633 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 C4BP0C0L5 1744 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 TESPA1A2RU30 521 aaPredicted RBP13□□□□□ -0.33
VPS4A-201ENST00000254950 ARHGEF35A5YM69 484 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 RGS22Q8NE09 1264 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 DPF2Q92785 391 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 SLC10A4Q96EP9 437 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 VCPKMTQ9H867 229 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 NUP98P52948 1817 aa13□□□□□ -0.33
VPS4A-201ENST00000254950 HS2ST1Q7LGA3 356 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 RABGAP1Q9Y3P9 1069 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 TOGARAM1Q9Y4F4 1720 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 KARSQ15046 597 aaKnown RBP12.99□□□□□ -0.33
VPS4A-201ENST00000254950 SYCP1Q15431 976 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 FKBP1CQ5VVH2 108 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 CACNA2D4Q7Z3S7 1137 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 TRIML1Q8N9V2 468 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 LPAR1Q92633 364 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 BLZF1Q9H2G9 400 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 TTC12Q9H892 705 aaPredicted RBP12.99□□□□□ -0.33
VPS4A-201ENST00000254950 SCAF8Q9UPN6 1271 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms