RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 IKQ13123 557 aaPredicted RBP12.22□□□□□ -0.45
SCN1A-222ENST00000642141 RRP12Q5JTH9 1297 aaKnown RBP12.22□□□□□ -0.45
SCN1A-222ENST00000642141 OLFML2BQ68BL8 750 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 RASGRP2Q7LDG7 609 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 ZNF589Q86UQ0 364 aaPredicted RBP12.22□□□□□ -0.45
SCN1A-222ENST00000642141 CHD1LQ86WJ1 897 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 PRPF38AQ8NAV1 312 aaKnown RBP12.22□□□□□ -0.45
SCN1A-222ENST00000642141 MKL1Q969V6 931 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 HOMER2Q9NSB8 354 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 SLC5A4Q9NY91 659 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 STX8Q9UNK0 236 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 TMEM232C9JQI7 657 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 IGHA2P01877 340 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 FGAP02671 866 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 COL6A1P12109 1028 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 NUCB1Q02818 461 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 MCMDC2Q4G0Z9 681 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 PLEKHM2Q8IWE5 1019 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 SMC5Q8IY18 1101 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 ABRAQ8N0Z2 381 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 TEX13BQ9BXU2 312 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 IL17RBQ9NRM6 502 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 HELLSQ9NRZ9 838 aa12.21□□□□□ -0.45
SCN1A-222ENST00000642141 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.21□□□□□ -0.45
SCN1A-222ENST00000642141 A0A0G2JMZ2 1700 aa12.2□□□□□ -0.46
SCN1A-222ENST00000642141 BMP3P12645 472 aa12.2□□□□□ -0.46
SCN1A-222ENST00000642141 ZNF792Q3KQV3 632 aa12.2□□□□□ -0.46
SCN1A-222ENST00000642141 KCTD1Q719H9 257 aa12.2□□□□□ -0.46
SCN1A-222ENST00000642141 GMCL1P1Q8NEA9 526 aa12.2□□□□□ -0.46
SCN1A-222ENST00000642141 FERMT2Q96AC1 680 aa12.2□□□□□ -0.46
SCN1A-222ENST00000642141 LENG1Q96BZ8 264 aaPredicted RBP12.2□□□□□ -0.46
SCN1A-222ENST00000642141 DDX11Q96FC9 970 aa12.2□□□□□ -0.46
SCN1A-222ENST00000642141 PRO3102Q9H379 93 aa12.2□□□□□ -0.46
SCN1A-222ENST00000642141 FEM1BQ9UK73 627 aa12.2□□□□□ -0.46
SCN1A-222ENST00000642141 COL11A1P12107 1806 aaPredicted RBP12.2□□□□□ -0.46
SCN1A-222ENST00000642141 TRIOBPQ9H2D6 2365 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 SEPT4O43236 478 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 MSCO60682 206 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 HSPD1P10809 573 aaKnown RBP12.19□□□□□ -0.46
SCN1A-222ENST00000642141 ADCYAP1R1P41586 468 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 SLC1A4P43007 532 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 MAGEA10P43363 369 aaPredicted RBP12.19□□□□□ -0.46
SCN1A-222ENST00000642141 CCDC174Q6PII3 467 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 AGBL1Q96MI9 1066 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 TINF2Q9BSI4 451 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 SLC38A10Q9HBR0 1119 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 ALPK3Q96L96 1907 aa12.19□□□□□ -0.46
SCN1A-222ENST00000642141 GREB1LQ9C091 1923 aaPredicted RBP12.19□□□□□ -0.46
SCN1A-222ENST00000642141 SZT2Q5T011 3432 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 PARP14Q460N5 1801 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 DNM1LO00429 736 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 PGK1P00558 417 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 SDSP20132 328 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 MDM2Q00987 491 aaPredicted RBP12.18□□□□□ -0.46
SCN1A-222ENST00000642141 AAMPQ13685 434 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 ALX1Q15699 326 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 CWC27Q6UX04 472 aaKnown RBP12.18□□□□□ -0.46
SCN1A-222ENST00000642141 ANKRD35Q8N283 1001 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 ARRDC4Q8NCT1 418 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 ANAPC4Q9UJX5 808 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 ATP11BQ9Y2G3 1177 aa12.18□□□□□ -0.46
SCN1A-222ENST00000642141 MYH4Q9Y623 1939 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 CCDC171Q6TFL3 1326 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 KBTBD13C9JR72 458 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 SOX1O00570 391 aaPredicted RBP12.17□□□□□ -0.46
SCN1A-222ENST00000642141 COPB2P35606 906 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 SLC16A2P36021 539 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 STAT2P52630 851 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 CNTN2Q02246 1040 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 LRRC41Q15345 812 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 CCDC96Q2M329 555 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 TTBK2Q6IQ55 1244 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 RCSD1Q6JBY9 416 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 CHURC1Q8WUH1 139 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 STAG1Q8WVM7 1258 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 GDF15Q99988 308 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 GPCPD1Q9NPB8 672 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 CNPY2Q9Y2B0 182 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 DDX49Q9Y6V7 483 aaKnown RBP12.17□□□□□ -0.46
SCN1A-222ENST00000642141 PLIN4Q96Q06 1357 aa12.17□□□□□ -0.46
SCN1A-222ENST00000642141 FRMPD2Q68DX3 1309 aaPredicted RBP12.16□□□□□ -0.46
SCN1A-222ENST00000642141 ZNFX1Q9P2E3 1918 aaKnown RBP12.16□□□□□ -0.46
SCN1A-222ENST00000642141 ORC4O43929 436 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 SNAI1O95863 264 aaPredicted RBP12.16□□□□□ -0.46
SCN1A-222ENST00000642141 ZNF865P0CJ78 1059 aaPredicted RBP12.16□□□□□ -0.46
SCN1A-222ENST00000642141 RARBP10826 455 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 ALAS1P13196 640 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 RTP1P59025 263 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 TBC1D10CQ8IV04 446 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 LRCH3Q96II8 777 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 GMCL1Q96IK5 515 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 TMEM47Q9BQJ4 181 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 ZKSCAN3Q9BRR0 538 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 UBE2OQ9C0C9 1292 aaKnown RBP12.16□□□□□ -0.46
SCN1A-222ENST00000642141 XPNPEP3Q9NQH7 507 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 DIAPH3Q9NSV4 1193 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 ZHX1Q9UKY1 873 aaPredicted RBP12.16□□□□□ -0.46
SCN1A-222ENST00000642141 SYNPO2Q9UMS6 1093 aa12.16□□□□□ -0.46
SCN1A-222ENST00000642141 DIS3Q9Y2L1 958 aaKnown RBP12.16□□□□□ -0.46
SCN1A-222ENST00000642141 ZNF236Q9UL36 1845 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms