RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 GUCY2CP25092 1073 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 CAVIN4Q5BKX8 364 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 NHEJ1Q9H9Q4 299 aaPredicted RBP12.28□□□□□ -0.44
CLN3-244ENST00000636147 RTL9Q8NET4 1388 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 ERBB3P21860 1342 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 KIDINS220Q9ULH0 1771 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 ECM2O94769 699 aaPredicted RBP12.28□□□□□ -0.44
CLN3-244ENST00000636147 BMP6P22004 513 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 HNRNPLLQ8WVV9 542 aaKnown RBP12.28□□□□□ -0.44
CLN3-244ENST00000636147 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.28□□□□□ -0.44
CLN3-244ENST00000636147 NFU1Q9UMS0 254 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 HYOU1Q9Y4L1 999 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 TRAF5O00463 557 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 ABL1P00519 1130 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 IRAK1P51617 712 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 TNNC1P63316 161 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 SLC20A2Q08357 652 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 ZNF444Q8N0Y2 327 aaPredicted RBP12.28□□□□□ -0.44
CLN3-244ENST00000636147 GPKOWQ92917 476 aaPredicted RBP eCLIP12.28□□□□□ -0.44
CLN3-244ENST00000636147 KRT12Q99456 494 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 HPSEQ9Y251 543 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 PIK3C2BO00750 1634 aa12.28□□□□□ -0.44
CLN3-244ENST00000636147 CYP2D7A0A087X1C5 515 aa12.27□□□□□ -0.44
CLN3-244ENST00000636147 GCOM1H8Y6P7 765 aaPredicted RBP12.27□□□□□ -0.44
CLN3-244ENST00000636147 BACH1O14867 736 aa12.27□□□□□ -0.44
CLN3-244ENST00000636147 NEBLO76041 1014 aa12.27□□□□□ -0.44
CLN3-244ENST00000636147 HEXIM1O94992 359 aaKnown RBP12.27□□□□□ -0.44
CLN3-244ENST00000636147 MYZAPP0CAP1 466 aa12.27□□□□□ -0.44
CLN3-244ENST00000636147 TBC1D31Q96DN5 1066 aa12.27□□□□□ -0.44
CLN3-244ENST00000636147 NUP58Q9BVL2 599 aa12.27□□□□□ -0.44
CLN3-244ENST00000636147 MLXIPQ9HAP2 919 aa12.27□□□□□ -0.44
CLN3-244ENST00000636147 LY9Q9HBG7 655 aa12.27□□□□□ -0.44
CLN3-244ENST00000636147 HPCAL4Q9UM19 191 aa12.27□□□□□ -0.44
CLN3-244ENST00000636147 CALML3P27482 149 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 EHHADHQ08426 723 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 PDIA6Q15084 440 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 KRT71Q3SY84 523 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 DNAJC10Q8IXB1 793 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 SLC39A2Q9NP94 309 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 KCND1Q9NSA2 647 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 SEC63Q9UGP8 760 aaKnown RBP12.27□□□□□ -0.45
CLN3-244ENST00000636147 H7C1W4 665 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 VIMP08670 466 aaKnown RBP12.27□□□□□ -0.45
CLN3-244ENST00000636147 CD44P16070 742 aaKnown RBP12.27□□□□□ -0.45
CLN3-244ENST00000636147 GNAT2P19087 354 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 PRCPP42785 496 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 NAPAP54920 295 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 ERVK-24P63145 666 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 TCIRG1Q13488 830 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 LRRC1Q9BTT6 524 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 TBC1D7Q9P0N9 293 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 PXDNLA1KZ92 1463 aa12.27□□□□□ -0.45
CLN3-244ENST00000636147 MROH1Q8NDA8 1641 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 NCK2O43639 380 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 TCP1P17987 556 aaKnown RBP12.26□□□□□ -0.45
CLN3-244ENST00000636147 BCAMP50895 628 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 CNOT6LQ96LI5 555 aaKnown RBP12.26□□□□□ -0.45
CLN3-244ENST00000636147 FTCDO95954 541 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 TXKP42681 527 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 EPHB4P54760 987 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 GUCY1A3Q02108 690 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 SF3B2Q13435 895 aaKnown RBP12.26□□□□□ -0.45
CLN3-244ENST00000636147 INF2Q27J81 1249 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 NFRKBQ6P4R8 1299 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 MB21D1Q8N884 522 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 BAZ2BQ9UIF8 2168 aaKnown RBP12.26□□□□□ -0.45
CLN3-244ENST00000636147 MAP2K7O14733 419 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 PLEKHA8P1O95397 391 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 CTNNA1P35221 906 aaKnown RBP12.26□□□□□ -0.45
CLN3-244ENST00000636147 FOXO4P98177 505 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 UBE3CQ15386 1083 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 PUM3Q15397 648 aaKnown RBP12.26□□□□□ -0.45
CLN3-244ENST00000636147 MSANTD4Q8NCY6 345 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 UHMK1Q8TAS1 419 aaKnown RBP12.26□□□□□ -0.45
CLN3-244ENST00000636147 FAM212AQ96EL1 285 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 TACO1Q9BSH4 297 aaKnown RBP12.26□□□□□ -0.45
CLN3-244ENST00000636147 RWDD2AQ9UIY3 292 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 ODF2LQ9ULJ1 636 aa12.26□□□□□ -0.45
CLN3-244ENST00000636147 A0A1B0GUA9 196 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 KRT14P02533 472 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 LIFRP42702 1097 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 IKQ13123 557 aaPredicted RBP12.25□□□□□ -0.45
CLN3-244ENST00000636147 PPP1R7Q15435 360 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 TMEM266Q2M3C6 531 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 DZIP1Q86YF9 867 aaKnown RBP12.25□□□□□ -0.45
CLN3-244ENST00000636147 LCORLQ8N3X6 602 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 STRBPQ96SI9 672 aaKnown RBP12.25□□□□□ -0.45
CLN3-244ENST00000636147 AATFQ9NY61 560 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLN3-244ENST00000636147 DUSP10Q9Y6W6 482 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 USP17L12C9JPN9 530 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 USP17L21D6R901 530 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 MYO1FO00160 1098 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 KCNK3O14649 394 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 EIF4A3P38919 411 aaKnown RBP12.25□□□□□ -0.45
CLN3-244ENST00000636147 RABL6Q3YEC7 729 aaPredicted RBP12.25□□□□□ -0.45
CLN3-244ENST00000636147 VPS36Q86VN1 386 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 MCM9Q9NXL9 1143 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 CALM1P0DP23 149 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 CALM2P0DP24 149 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 CALM3P0DP25 149 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms