RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 WTAPQ15007 396 aa21.18■□□□□ 0.98
CLN3-239ENST00000628023 GPRC5AQ8NFJ5 357 aa21.18■□□□□ 0.98
CLN3-239ENST00000628023 ANKS1AQ92625 1134 aa21.18■□□□□ 0.98
CLN3-239ENST00000628023 JAKMIP1Q96N16 626 aaKnown RBP21.18■□□□□ 0.98
CLN3-239ENST00000628023 FEM1BQ9UK73 627 aa21.18■□□□□ 0.98
CLN3-239ENST00000628023 TMEM232C9JQI7 657 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 FARP2O94887 1054 aaPredicted RBP21.17■□□□□ 0.98
CLN3-239ENST00000628023 DSG3P32926 999 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 STAT2P52630 851 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 ANTXR2P58335 489 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 TSGA10IPQ3SY00 556 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 LBX2Q6XYB7 198 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 KCTD1Q719H9 257 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 RASGRP2Q7LDG7 609 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 CCAR1Q8IX12 1150 aaKnown RBP21.17■□□□□ 0.98
CLN3-239ENST00000628023 ATG4CQ96DT6 458 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 MORF4L1Q9UBU8 362 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 PPP1R9AQ9ULJ8 1098 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 RABGAP1Q9Y3P9 1069 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 CTDP1Q9Y5B0 961 aaPredicted RBP21.17■□□□□ 0.98
CLN3-239ENST00000628023 SNX14Q9Y5W7 946 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 NR2E3Q9Y5X4 410 aa21.17■□□□□ 0.98
CLN3-239ENST00000628023 DOCK3Q8IZD9 2030 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 FRMPD2Q68DX3 1309 aaPredicted RBP21.16■□□□□ 0.98
CLN3-239ENST00000628023 HMGB1P09429 215 aaKnown RBP21.16■□□□□ 0.98
CLN3-239ENST00000628023 ERVK-9P63128 1117 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 ERVK-24P63145 666 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 SEC23AQ15436 765 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 ADCK5Q3MIX3 580 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 MB21D1Q8N884 522 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 KIFC2Q96AC6 838 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 TMEM87BQ96K49 555 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 DEFB118Q96PH6 123 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 CWC22Q9HCG8 908 aaKnown RBP21.16■□□□□ 0.98
CLN3-239ENST00000628023 TXNRD2Q9NNW7 524 aa21.16■□□□□ 0.98
CLN3-239ENST00000628023 COLQQ9Y215 455 aaPredicted RBP21.16■□□□□ 0.98
CLN3-239ENST00000628023 PEX10O60683 326 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 HMGCRP04035 888 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 PDHBP11177 359 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 PLS1Q14651 629 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 C8orf34Q49A92 452 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 NFXL1Q6ZNB6 911 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 FAM160B2Q86V87 743 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 PRPF38AQ8NAV1 312 aaKnown RBP21.15■□□□□ 0.98
CLN3-239ENST00000628023 CHURC1Q8WUH1 139 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 KCNB2Q92953 911 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 RBPJLQ9UBG7 517 aa21.15■□□□□ 0.98
CLN3-239ENST00000628023 PSMA5P28066 241 aa21.14■□□□□ 0.97
CLN3-239ENST00000628023 CCNA1P78396 465 aa21.14■□□□□ 0.97
CLN3-239ENST00000628023 FGD1P98174 961 aa21.14■□□□□ 0.97
CLN3-239ENST00000628023 DHX32Q7L7V1 743 aaKnown RBP21.14■□□□□ 0.97
CLN3-239ENST00000628023 UBE2Q1Q7Z7E8 422 aa21.14■□□□□ 0.97
CLN3-239ENST00000628023 MTA3Q9BTC8 594 aa21.14■□□□□ 0.97
CLN3-239ENST00000628023 LRRC2Q9BYS8 371 aa21.14■□□□□ 0.97
CLN3-239ENST00000628023 GPCPD1Q9NPB8 672 aa21.14■□□□□ 0.97
CLN3-239ENST00000628023 PAK6Q9NQU5 681 aaPredicted RBP21.14■□□□□ 0.97
CLN3-239ENST00000628023 CCDC69A6NI79 296 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 SH2B2O14492 632 aaPredicted RBP21.13■□□□□ 0.97
CLN3-239ENST00000628023 ZBED4O75132 1171 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 CNMDO75829 334 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 MAPK4P31152 587 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 WDR78Q5VTH9 848 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 BLOC1S2Q6QNY1 142 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 CATIPQ7Z7H3 387 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 IGDCC4Q8TDY8 1250 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 LY9Q9HBG7 655 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 BTBD7Q9P203 1132 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 GJD2Q9UKL4 321 aa21.13■□□□□ 0.97
CLN3-239ENST00000628023 WDR19Q8NEZ3 1342 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 VWA5AO00534 786 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 PARP1P09874 1014 aaKnown RBP21.12■□□□□ 0.97
CLN3-239ENST00000628023 CASTP20810 708 aaKnown RBP21.12■□□□□ 0.97
CLN3-239ENST00000628023 ZNF543Q08ER8 600 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 COL9A3Q14050 684 aaPredicted RBP21.12■□□□□ 0.97
CLN3-239ENST00000628023 ASPRV1Q53RT3 343 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 GPATCH4Q5T3I0 446 aaKnown RBP21.12■□□□□ 0.97
CLN3-239ENST00000628023 SOCS4Q8WXH5 440 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 TCEANC2Q96MN5 208 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 NUDT12Q9BQG2 462 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.12■□□□□ 0.97
CLN3-239ENST00000628023 SENP2Q9HC62 589 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 HMX1Q9NP08 348 aaPredicted RBP21.12■□□□□ 0.97
CLN3-239ENST00000628023 PARP14Q460N5 1801 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 A0A0G2JMZ2 1700 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 RLFQ13129 1914 aa21.12■□□□□ 0.97
CLN3-239ENST00000628023 SEC24BO95487 1268 aa21.11■□□□□ 0.97
CLN3-239ENST00000628023 GOLGA8HP0CJ92 632 aa21.11■□□□□ 0.97
CLN3-239ENST00000628023 SNHG28P0DPA3 235 aa21.11■□□□□ 0.97
CLN3-239ENST00000628023 POTEEQ6S8J3 1075 aa21.11■□□□□ 0.97
CLN3-239ENST00000628023 TRMT44Q8IYL2 757 aaKnown RBP21.11■□□□□ 0.97
CLN3-239ENST00000628023 TMTC2Q8N394 836 aa21.11■□□□□ 0.97
CLN3-239ENST00000628023 NUP133Q8WUM0 1156 aa21.11■□□□□ 0.97
CLN3-239ENST00000628023 SPATC1LQ9H0A9 340 aa21.11■□□□□ 0.97
CLN3-239ENST00000628023 GPHNQ9NQX3 736 aaPredicted RBP21.11■□□□□ 0.97
CLN3-239ENST00000628023 RPTORQ8N122 1335 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 EVI5O60447 810 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 PLA2G6O60733 806 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 CPA1P15085 419 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 SLC16A2P36021 539 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 Q3C1V9 767 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms