RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ZNF543Q08ER8 600 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 SOGA3Q5TF21 947 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 DEFB132Q7Z7B7 95 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 CPVLQ9H3G5 476 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 DNAJC18Q9H819 358 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 VWA3AA6NCI4 1184 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 DDTLA6NHG4 134 aaPredicted RBP25.12■■□□□ 1.61
PNKP-220ENST00000627232 SLFN14P0C7P3 912 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 LONP1P36776 959 aaKnown RBP25.12■■□□□ 1.61
PNKP-220ENST00000627232 GPATCH4Q5T3I0 446 aaKnown RBP25.12■■□□□ 1.61
PNKP-220ENST00000627232 DRC7Q8IY82 874 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 RASGRP4Q8TDF6 673 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 SMARCE1Q969G3 411 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 EPSTI1Q96J88 318 aa25.12■■□□□ 1.61
PNKP-220ENST00000627232 SMCO2A6NFE2 343 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 LAD1O00515 517 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 MPHOSPH10O00566 681 aaKnown RBP25.11■■□□□ 1.61
PNKP-220ENST00000627232 FOXN1O15353 648 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 TCP10Q12799 353 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 CFAP100Q494V2 611 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 TATDN1Q6P1N9 297 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 SH3RF1Q7Z6J0 888 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 HOMER1Q86YM7 354 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 MKL1Q969V6 931 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 NYAP2Q9P242 653 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 MAN1B1Q9UKM7 699 aa25.11■■□□□ 1.61
PNKP-220ENST00000627232 FRMPD2Q68DX3 1309 aaPredicted RBP25.1■■□□□ 1.61
PNKP-220ENST00000627232 MYO1BO43795 1136 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 KCNA3P22001 575 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 CACNB3P54284 484 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 NCAPHQ15003 741 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 PPP1R18Q6NYC8 613 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 SH3BP5LQ7L8J4 393 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 PDILTQ8N807 584 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 SPATA20Q8TB22 786 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 TRIM34Q9BYJ4 488 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 UBA5Q9GZZ9 404 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 TTC12Q9H892 705 aaPredicted RBP25.1■■□□□ 1.61
PNKP-220ENST00000627232 VAT1LQ9HCJ6 419 aa25.1■■□□□ 1.61
PNKP-220ENST00000627232 A0A087X0B3 334 aa25.09■■□□□ 1.61
PNKP-220ENST00000627232 SMC2O95347 1197 aa25.09■■□□□ 1.61
PNKP-220ENST00000627232 DPEP1P16444 411 aa25.09■■□□□ 1.61
PNKP-220ENST00000627232 EIF6P56537 245 aaKnown RBP25.09■■□□□ 1.61
PNKP-220ENST00000627232 ORC2Q13416 577 aaPredicted RBP25.09■■□□□ 1.61
PNKP-220ENST00000627232 CERKLQ49MI3 558 aaPredicted RBP25.09■■□□□ 1.61
PNKP-220ENST00000627232 RSBN1LQ6PCB5 846 aaPredicted RBP25.09■■□□□ 1.61
PNKP-220ENST00000627232 CLEC10AQ8IUN9 316 aa25.09■■□□□ 1.61
PNKP-220ENST00000627232 DHX58Q96C10 678 aa25.09■■□□□ 1.61
PNKP-220ENST00000627232 KANSL2Q9H9L4 492 aa25.09■■□□□ 1.61
PNKP-220ENST00000627232 DACH1Q9UI36 760 aa25.09■■□□□ 1.61
PNKP-220ENST00000627232 PRR29P0C7W0 189 aa25.08■■□□□ 1.61
PNKP-220ENST00000627232 PRPHP41219 470 aa25.08■■□□□ 1.61
PNKP-220ENST00000627232 MORC3Q14149 939 aa25.08■■□□□ 1.61
PNKP-220ENST00000627232 NONOQ15233 471 aaKnown RBP eCLIP25.08■■□□□ 1.61
PNKP-220ENST00000627232 IL17AQ16552 155 aa25.08■■□□□ 1.61
PNKP-220ENST00000627232 INF2Q27J81 1249 aa25.08■■□□□ 1.61
PNKP-220ENST00000627232 ZSCAN29Q8IWY8 852 aaPredicted RBP25.08■■□□□ 1.61
PNKP-220ENST00000627232 MLKLQ8NB16 471 aa25.08■■□□□ 1.61
PNKP-220ENST00000627232 FBXO41Q8TF61 875 aa25.08■■□□□ 1.61
PNKP-220ENST00000627232 ZNF830Q96NB3 372 aaPredicted RBP25.08■■□□□ 1.61
PNKP-220ENST00000627232 ARFGEF1Q9Y6D6 1849 aa25.08■■□□□ 1.6
PNKP-220ENST00000627232 VIL1P09327 827 aaKnown RBP25.07■■□□□ 1.6
PNKP-220ENST00000627232 MYL5Q02045 173 aa25.07■■□□□ 1.6
PNKP-220ENST00000627232 CT47A1Q5JQC4 288 aaPredicted RBP25.07■■□□□ 1.6
PNKP-220ENST00000627232 ISM2Q6H9L7 571 aa25.07■■□□□ 1.6
PNKP-220ENST00000627232 TDRD3Q9H7E2 651 aaKnown RBP25.07■■□□□ 1.6
PNKP-220ENST00000627232 GPCPD1Q9NPB8 672 aa25.07■■□□□ 1.6
PNKP-220ENST00000627232 PNMA6FA0A0J9YX94 578 aa25.07■■□□□ 1.6
PNKP-220ENST00000627232 IQUBQ8NA54 791 aa25.07■■□□□ 1.6
PNKP-220ENST00000627232 PAGE5Q96GU1 130 aa25.07■■□□□ 1.6
PNKP-220ENST00000627232 KCNF1Q9H3M0 494 aa25.07■■□□□ 1.6
PNKP-220ENST00000627232 OFD1O75665 1012 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 TXLNAP40222 546 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 E2F4Q16254 413 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 TMEM179Q6ZVK1 233 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 CCDC186Q7Z3E2 898 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 LARGE2Q8N3Y3 721 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 DCAF4Q8WV16 495 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 MTMR8Q96EF0 704 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 PRMT6Q96LA8 375 aaPredicted RBP25.06■■□□□ 1.6
PNKP-220ENST00000627232 GMLQ99445 158 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 JMJD4Q9H9V9 463 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 TMOD2Q9NZR1 351 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 HDAC9Q9UKV0 1011 aa25.06■■□□□ 1.6
PNKP-220ENST00000627232 BMP6P22004 513 aa25.05■■□□□ 1.6
PNKP-220ENST00000627232 PTGS1P23219 599 aa25.05■■□□□ 1.6
PNKP-220ENST00000627232 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.05■■□□□ 1.6
PNKP-220ENST00000627232 DTHD1Q6ZMT9 781 aa25.05■■□□□ 1.6
PNKP-220ENST00000627232 ADGRF4Q8IZF3 695 aa25.05■■□□□ 1.6
PNKP-220ENST00000627232 REXO1Q8N1G1 1221 aaKnown RBP25.05■■□□□ 1.6
PNKP-220ENST00000627232 ADCY7P51828 1080 aa25.04■■□□□ 1.6
PNKP-220ENST00000627232 ATP2B2Q01814 1243 aa25.04■■□□□ 1.6
PNKP-220ENST00000627232 CCDC96Q2M329 555 aa25.04■■□□□ 1.6
PNKP-220ENST00000627232 NEK8Q86SG6 692 aa25.04■■□□□ 1.6
PNKP-220ENST00000627232 GRAMD1CQ8IYS0 662 aa25.04■■□□□ 1.6
PNKP-220ENST00000627232 EEF2P13639 858 aaKnown RBP25.03■■□□□ 1.6
PNKP-220ENST00000627232 GSDMAQ96QA5 445 aa25.03■■□□□ 1.6
PNKP-220ENST00000627232 COL4A5P29400 1685 aa25.03■■□□□ 1.6
PNKP-220ENST00000627232 SPDYE2BA6NHP3 402 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 PSMD14O00487 310 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms