RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 ZMYND12Q9H0C1 365 aa22.39■■□□□ 1.18
CHRNA4-209ENST00000627000 TDRD3Q9H7E2 651 aaKnown RBP22.39■■□□□ 1.18
CHRNA4-209ENST00000627000 ATP2B2Q01814 1243 aa22.39■■□□□ 1.17
CHRNA4-209ENST00000627000 GALNT17Q6IS24 598 aa22.39■■□□□ 1.17
CHRNA4-209ENST00000627000 CCDC186Q7Z3E2 898 aa22.39■■□□□ 1.17
CHRNA4-209ENST00000627000 ZSCAN29Q8IWY8 852 aaPredicted RBP22.39■■□□□ 1.17
CHRNA4-209ENST00000627000 SEC63Q9UGP8 760 aaKnown RBP22.39■■□□□ 1.17
CHRNA4-209ENST00000627000 MAN1B1Q9UKM7 699 aa22.39■■□□□ 1.17
CHRNA4-209ENST00000627000 HOOK1Q9UJC3 728 aaKnown RBP22.38■■□□□ 1.17
CHRNA4-209ENST00000627000 SMCO2A6NFE2 343 aa22.38■■□□□ 1.17
CHRNA4-209ENST00000627000 DPEP1P16444 411 aa22.38■■□□□ 1.17
CHRNA4-209ENST00000627000 KCNA3P22001 575 aa22.38■■□□□ 1.17
CHRNA4-209ENST00000627000 CFAP100Q494V2 611 aa22.38■■□□□ 1.17
CHRNA4-209ENST00000627000 C17orf53Q8N3J3 647 aaPredicted RBP22.38■■□□□ 1.17
CHRNA4-209ENST00000627000 DHX36Q9H2U1 1008 aaKnown RBP22.38■■□□□ 1.17
CHRNA4-209ENST00000627000 CCDC144BQ3MJ40 725 aa22.37■■□□□ 1.17
CHRNA4-209ENST00000627000 ASPRV1Q53RT3 343 aa22.37■■□□□ 1.17
CHRNA4-209ENST00000627000 MRFAP1L1Q96HT8 127 aa22.37■■□□□ 1.17
CHRNA4-209ENST00000627000 PRMT6Q96LA8 375 aaPredicted RBP22.37■■□□□ 1.17
CHRNA4-209ENST00000627000 CDC25BP30305 580 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 SARSP49591 514 aaKnown RBP22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 CCDC93Q567U6 631 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 TTBK2Q6IQ55 1244 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 PI4KBQ9UBF8 816 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 ZNF543Q08ER8 600 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 NT5DC1Q5TFE4 455 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 SMARCE1Q969G3 411 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 HSD3B7Q9H2F3 369 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 TMEM60Q9H2L4 133 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 COL4A5P29400 1685 aa22.36■■□□□ 1.17
CHRNA4-209ENST00000627000 PSME4Q14997 1843 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 SMTNL1A8MU46 457 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 TPM3P06753 285 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 CASP1P29466 404 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 AFMP43652 599 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 KANK3Q6NY19 840 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 CCDC12Q8WUD4 166 aaPredicted RBP22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 COA7Q96BR5 231 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 CCDC17Q96LX7 622 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 ZNF277Q9NRM2 450 aaPredicted RBP22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 PYCARDQ9ULZ3 195 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 RAD17O75943 681 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 SLFN14P0C7P3 912 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 C6orf50Q9HD87 102 aa22.35■■□□□ 1.17
CHRNA4-209ENST00000627000 IKBKBO14920 756 aa22.34■■□□□ 1.17
CHRNA4-209ENST00000627000 LMOD1P29536 600 aaPredicted RBP22.34■■□□□ 1.17
CHRNA4-209ENST00000627000 CDC25AP30304 524 aa22.34■■□□□ 1.17
CHRNA4-209ENST00000627000 CERKLQ49MI3 558 aaPredicted RBP22.34■■□□□ 1.17
CHRNA4-209ENST00000627000 SOGA3Q5TF21 947 aa22.34■■□□□ 1.17
CHRNA4-209ENST00000627000 SH3RF1Q7Z6J0 888 aa22.34■■□□□ 1.17
CHRNA4-209ENST00000627000 FAM177A1Q8N128 213 aaPredicted RBP22.34■■□□□ 1.17
CHRNA4-209ENST00000627000 PAGE5Q96GU1 130 aa22.34■■□□□ 1.17
CHRNA4-209ENST00000627000 SLC16A2P36021 539 aa22.33■■□□□ 1.17
CHRNA4-209ENST00000627000 LRMPQ12912 555 aa22.33■■□□□ 1.17
CHRNA4-209ENST00000627000 ARL6IP4Q66PJ3 421 aaKnown RBP22.33■■□□□ 1.17
CHRNA4-209ENST00000627000 KCTD1Q719H9 257 aa22.33■■□□□ 1.17
CHRNA4-209ENST00000627000 JMJD4Q9H9V9 463 aa22.33■■□□□ 1.17
CHRNA4-209ENST00000627000 NPM3O75607 178 aaKnown RBP22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 OFD1O75665 1012 aa22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 GNA11P29992 359 aa22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 MORC3Q14149 939 aa22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 CCDC96Q2M329 555 aa22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 RTKN2Q8IZC4 609 aa22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 ADGRF4Q8IZF3 695 aa22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 SPATA20Q8TB22 786 aa22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 STAMQ92783 540 aa22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 TMEM260Q9NX78 707 aa22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 BIN2Q9UBW5 565 aaPredicted RBP22.33■■□□□ 1.16
CHRNA4-209ENST00000627000 EEF2P13639 858 aaKnown RBP22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 MYL5Q02045 173 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 E2F4Q16254 413 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 LARGE2Q8N3Y3 721 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 PSMD14O00487 310 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 GDF11O95390 407 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 ATP1A3P13637 1013 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 JAKMIP3Q5VZ66 844 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 TATDN1Q6P1N9 297 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 RSBN1LQ6PCB5 846 aaPredicted RBP22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 KRT25Q7Z3Z0 450 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 PSMD1Q99460 953 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 TRIM34Q9BYJ4 488 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 XPO4Q9C0E2 1151 aaKnown RBP22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 IFNKQ9P0W0 207 aa22.32■■□□□ 1.16
CHRNA4-209ENST00000627000 RAD21O60216 631 aa22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 PPP1R11O60927 126 aaPredicted RBP22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 SEPT2Q15019 361 aa22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 NONOQ15233 471 aaKnown RBP eCLIP22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 ZBTB12Q9Y330 459 aaPredicted RBP22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 LONP1P36776 959 aaKnown RBP22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 TPM4P67936 248 aa22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 ARID5BQ14865 1188 aa22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 LETM2Q2VYF4 491 aa22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 SIAH1Q8IUQ4 282 aa22.31■■□□□ 1.16
CHRNA4-209ENST00000627000 ESYT2A0FGR8 921 aa22.3■■□□□ 1.16
CHRNA4-209ENST00000627000 PP2D1A8MPX8 630 aa22.3■■□□□ 1.16
CHRNA4-209ENST00000627000 SMC2O95347 1197 aa22.3■■□□□ 1.16
CHRNA4-209ENST00000627000 JAG1P78504 1218 aa22.3■■□□□ 1.16
CHRNA4-209ENST00000627000 CACTINQ8WUQ7 758 aaKnown RBP22.3■■□□□ 1.16
CHRNA4-209ENST00000627000 CLRN2A0PK11 232 aa22.29■■□□□ 1.16
CHRNA4-209ENST00000627000 USP17L10C9JJH3 530 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms