RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 GOPCQ9HD26 462 aa17.83■□□□□ 0.44
CPSF1-213ENST00000620219 ARID3AQ99856 593 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 RNF181Q9P0P0 153 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 TECP42680 631 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 IQUBQ8NA54 791 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 TBCKQ8TEA7 893 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 BMP2KQ9NSY1 1161 aaPredicted RBP17.82■□□□□ 0.44
CPSF1-213ENST00000620219 UVSSAQ2YD98 709 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 NOM1Q5C9Z4 860 aaKnown RBP17.82■□□□□ 0.44
CPSF1-213ENST00000620219 CCDC125Q86Z20 511 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 FAM163AQ96GL9 167 aaPredicted RBP17.82■□□□□ 0.44
CPSF1-213ENST00000620219 FBXO11Q86XK2 927 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 SYMPKQ92797 1274 aaKnown RBP17.82■□□□□ 0.44
CPSF1-213ENST00000620219 TMEM260Q9NX78 707 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 SAMM50Q9Y512 469 aa17.82■□□□□ 0.44
CPSF1-213ENST00000620219 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.81■□□□□ 0.44
CPSF1-213ENST00000620219 KLRG2A4D1S0 409 aaPredicted RBP17.81■□□□□ 0.44
CPSF1-213ENST00000620219 NEMFO60524 1076 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 CNTNAP5Q8WYK1 1306 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 YDJCA8MPS7 323 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 TGFB2P61812 414 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 KANK3Q6NY19 840 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 CCDC186Q7Z3E2 898 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 ZNF341Q9BYN7 854 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 AKAP11Q9UKA4 1901 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 ANKRD36CQ5JPF3 1778 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 STIM1Q13586 685 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 SHROOM1Q2M3G4 852 aaPredicted RBP17.81■□□□□ 0.44
CPSF1-213ENST00000620219 RCSD1Q6JBY9 416 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 NSMFQ6X4W1 530 aa17.81■□□□□ 0.44
CPSF1-213ENST00000620219 GRIN1Q05586 938 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 GRIPAP1Q4V328 841 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 ADGRF4Q8IZF3 695 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 MYOZ2Q9NPC6 264 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 KIAA1468Q9P260 1216 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.8■□□□□ 0.44
CPSF1-213ENST00000620219 GAKO14976 1311 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L15C9J2P7 530 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L13C9JLJ4 530 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L11C9JVI0 530 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L18D6R9N7 530 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L22D6RA61 530 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L17D6RBQ6 530 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L19D6RCP7 530 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L20D6RJB6 530 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 CHMP2AO43633 222 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 PDHBP11177 359 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 RCAN1P53805 252 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L24Q0WX57 530 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 DPCR1Q3MIW9 517 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 USP17L6PQ6QN14 398 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 NEK8Q86SG6 692 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 PPP1R9BQ96SB3 815 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 COL4A1P02462 1669 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 SPDYE2BA6NHP3 402 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 SPDYE6P0CI01 402 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 PTGS1P23219 599 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 ASIC1P78348 528 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 CDC37Q16543 378 aaPredicted RBP17.8■□□□□ 0.44
CPSF1-213ENST00000620219 FAM83BQ5T0W9 1011 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 FLOT1O75955 427 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 HOXA13P31271 388 aaPredicted RBP17.8■□□□□ 0.44
CPSF1-213ENST00000620219 MAD2L2Q9UI95 211 aa17.8■□□□□ 0.44
CPSF1-213ENST00000620219 SP4Q02446 784 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 KARSQ15046 597 aaKnown RBP17.79■□□□□ 0.44
CPSF1-213ENST00000620219 CALCRLQ16602 461 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 PTPN21Q16825 1174 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 KRT79Q5XKE5 535 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 FBXL16Q8N461 479 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.79■□□□□ 0.44
CPSF1-213ENST00000620219 ALAS1P13196 640 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 RAD51AP2Q09MP3 1159 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 LONRF3Q496Y0 759 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 BAZ2AQ9UIF9 1905 aaKnown RBP17.79■□□□□ 0.44
CPSF1-213ENST00000620219 A0A1W2PQ27 194 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 A0A1W2PQ64 194 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 A0A1W2PQD8 194 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 FERMT2Q96AC1 680 aa17.79■□□□□ 0.44
CPSF1-213ENST00000620219 TPM2P07951 284 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 CASP1P29466 404 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 POSTNQ15063 836 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 TRMT44Q8IYL2 757 aaKnown RBP17.78■□□□□ 0.44
CPSF1-213ENST00000620219 LRWD1Q9UFC0 647 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 SHMT1P34896 483 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 DPY19L2Q6NUT2 758 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 USP49Q70CQ1 688 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 SULF1Q8IWU6 871 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 CHURC1Q8WUH1 139 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 AMNQ9BXJ7 453 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 SHTN1A0MZ66 631 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 PPP6R2O75170 966 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 KIF4BQ2VIQ3 1234 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 FAM198AQ9UFP1 575 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 ZBTB21Q9ULJ3 1066 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 FOXN1O15353 648 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 U2AF2P26368 475 aaKnown RBP eCLIP17.78■□□□□ 0.448e-10■■■■□ 20.5
CPSF1-213ENST00000620219 PRR16Q569H4 304 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 PCDHA5Q9Y5H7 936 aa17.78■□□□□ 0.44
CPSF1-213ENST00000620219 TPM1P09493 284 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 ECE1P42892 770 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms