RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	PKN1	Q16512	942 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	CCDC96	Q2M329	555 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	RASGRP2	Q7LDG7	609 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	KLRG1	Q96E93	195 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	PGBD1	Q96JS3	809 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	AIFM3	Q96NN9	605 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	GOPC	Q9HD26	462 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	SPTLC3	Q9NUV7	552 aa		13.42	□□□□□ -0.26
VRK3-223	ENST00000601341	WDR90	Q96KV7	1748 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	UBE2Q2L	H0YL09	131 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	NDUFB10	O96000	172 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	SCG2	P13521	617 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	INPP5B	P32019	993 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	NF2	P35240	595 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	KRT40	Q6A162	431 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	OTUD7B	Q6GQQ9	843 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	SCYL3	Q8IZE3	742 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	BICD2	Q8TD16	824 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	ACER1	Q8TDN7	264 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	GPCPD1	Q9NPB8	672 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	PICK1	Q9NRD5	415 aa		13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	TFIP11	Q9UBB9	837 aa	Known RBP	13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.41	□□□□□ -0.26
VRK3-223	ENST00000601341	hCG_1642624	A0A1W2PR95	340 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	CYTH3	O43739	400 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	ECE1	P42892	770 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	PFKFB3	Q16875	520 aa	Predicted RBP	13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	FAM173B	Q6P4H8	233 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	SASS6	Q6UVJ0	657 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	RRP36	Q96EU6	259 aa	Known RBP	13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	RIOX1	Q9H6W3	641 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	GJB4	Q9NTQ9	266 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	CLEC11A	Q9Y240	323 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	SSC5D	A1L4H1	1573 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341		A0A1W2PQ27	194 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341		A0A1W2PQ64	194 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341		A0A1W2PQD8	194 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	USP2	O75604	605 aa	Predicted RBP	13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	BMP3	P12645	472 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	SAFB	Q15424	915 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	SLC35G1	Q2M3R5	365 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	KCTD1	Q719H9	257 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	BRAP	Q7Z569	592 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	UBA5	Q9GZZ9	404 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	VCPKMT	Q9H867	229 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	RRAGC	Q9HB90	399 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	RTEL1	Q9NZ71	1219 aa		13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	SEC63	Q9UGP8	760 aa	Known RBP	13.4	□□□□□ -0.26
VRK3-223	ENST00000601341	NR1I2	O75469	434 aa		13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	PRKG1	Q13976	671 aa		13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	NOL9	Q5SY16	702 aa	Known RBP	13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	FAM177A1	Q8N128	213 aa	Predicted RBP	13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	CDCA5	Q96FF9	252 aa		13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	PRIMPOL	Q96LW4	560 aa		13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	FEZ1	Q99689	392 aa		13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	CPVL	Q9H3G5	476 aa		13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	AS3MT	Q9HBK9	375 aa		13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	VAT1L	Q9HCJ6	419 aa		13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	SH3GLB2	Q9NR46	395 aa		13.39	□□□□□ -0.27
VRK3-223	ENST00000601341	YEATS4	O95619	227 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	MMP1	P03956	469 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	IREB2	P48200	963 aa	Known RBP	13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	MAP3K9	P80192	1104 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	KIF23	Q02241	960 aa	Predicted RBP	13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	FAM160A1	Q05DH4	1040 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	GNL2	Q13823	731 aa	Known RBP	13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	TTBK2	Q6IQ55	1244 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	DLK2	Q6UY11	383 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	CCDC73	Q6ZRK6	1079 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	CCDC84	Q86UT8	332 aa	Predicted RBP	13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	WDR18	Q9BV38	432 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	KIAA1683	Q9H0B3	1180 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	VPS54	Q9P1Q0	977 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	FZD1	Q9UP38	647 aa		13.38	□□□□□ -0.27
VRK3-223	ENST00000601341	DYNC1I1	O14576	645 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	PTPRA	P18433	802 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	CDC25B	P30305	580 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	USP14	P54578	494 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	ADAL	Q6DHV7	355 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	SARM1	Q6SZW1	724 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	HOMER1	Q86YM7	354 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	ADGRF4	Q8IZF3	695 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	SPICE1	Q8N0Z3	855 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	KCNG4	Q8TDN1	519 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	LPAR1	Q92633	364 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	PIGS	Q96S52	555 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	MAP7D2	Q96T17	732 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	JMJD4	Q9H9V9	463 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	POLR3E	Q9NVU0	708 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	KCNJ14	Q9UNX9	436 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	CSAD	Q9Y600	493 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	MYH4	Q9Y623	1939 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	USP17L10	C9JJH3	530 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	TMEM232	C9JQI7	657 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	hCG_1984214	I3L0E3	225 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms