RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 CTDSPL2Q05D32 466 aa18.74■□□□□ 0.59
VRK3-221ENST00000600284 VPS53Q5VIR6 699 aa18.74■□□□□ 0.59
VRK3-221ENST00000600284 SNRNP48Q6IEG0 339 aaKnown RBP18.74■□□□□ 0.59
VRK3-221ENST00000600284 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.74■□□□□ 0.59
VRK3-221ENST00000600284 LRRC47Q8N1G4 583 aaKnown RBP18.74■□□□□ 0.59
VRK3-221ENST00000600284 MSL3Q8N5Y2 521 aaKnown RBP18.74■□□□□ 0.59
VRK3-221ENST00000600284 EXOC6Q8TAG9 804 aa18.74■□□□□ 0.59
VRK3-221ENST00000600284 GMCL1Q96IK5 515 aa18.74■□□□□ 0.59
VRK3-221ENST00000600284 FAM227BQ96M60 508 aa18.74■□□□□ 0.59
VRK3-221ENST00000600284 SLC38A10Q9HBR0 1119 aa18.74■□□□□ 0.59
VRK3-221ENST00000600284 ZMYM6O95789 1325 aa18.74■□□□□ 0.59
VRK3-221ENST00000600284 COL11A1P12107 1806 aaPredicted RBP18.73■□□□□ 0.59
VRK3-221ENST00000600284 ORC4O43929 436 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 FGAP02671 866 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 PGK2P07205 417 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 BMP8BP34820 402 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 B4GALNT3Q6L9W6 998 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 PLEKHM2Q8IWE5 1019 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 CHURC1Q8WUH1 139 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 KIFC2Q96AC6 838 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 TINF2Q9BSI4 451 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 FBXO40Q9UH90 709 aa18.73■□□□□ 0.59
VRK3-221ENST00000600284 ALPK3Q96L96 1907 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 MYH4Q9Y623 1939 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 A0A0D9SFI3 127 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 PLA2G6O60733 806 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 HSPD1P10809 573 aaKnown RBP18.72■□□□□ 0.59
VRK3-221ENST00000600284 NOVP48745 357 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 STAT2P52630 851 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 MFAP1P55081 439 aaKnown RBP18.72■□□□□ 0.59
VRK3-221ENST00000600284 FAM160B2Q86V87 743 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 RILPL2Q969X0 211 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 GDF15Q99988 308 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 SENP6Q9GZR1 1112 aaPredicted RBP18.72■□□□□ 0.59
VRK3-221ENST00000600284 IL17RBQ9NRM6 502 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 STX8Q9UNK0 236 aa18.72■□□□□ 0.59
VRK3-221ENST00000600284 ZNFX1Q9P2E3 1918 aaKnown RBP18.71■□□□□ 0.59
VRK3-221ENST00000600284 TMEM232C9JQI7 657 aa18.71■□□□□ 0.59
VRK3-221ENST00000600284 SLC1A4P43007 532 aa18.71■□□□□ 0.59
VRK3-221ENST00000600284 NMIQ13287 307 aaPredicted RBP18.71■□□□□ 0.59
VRK3-221ENST00000600284 LRRC26Q2I0M4 334 aa18.71■□□□□ 0.59
VRK3-221ENST00000600284 PRAMEF19Q5SWL8 479 aa18.71■□□□□ 0.59
VRK3-221ENST00000600284 CPXCR1Q8N123 301 aa18.71■□□□□ 0.59
VRK3-221ENST00000600284 CHST13Q8NET6 341 aa18.71■□□□□ 0.59
VRK3-221ENST00000600284 STAG1Q8WVM7 1258 aa18.71■□□□□ 0.59
VRK3-221ENST00000600284 DDX11Q96FC9 970 aa18.71■□□□□ 0.59
VRK3-221ENST00000600284 RIPK3Q9Y572 518 aa18.71■□□□□ 0.59
VRK3-221ENST00000600284 DNAJC25-GNG10A0A024R161 153 aa18.7■□□□□ 0.58
VRK3-221ENST00000600284 KBTBD13C9JR72 458 aa18.7■□□□□ 0.58
VRK3-221ENST00000600284 RANBP6O60518 1105 aaKnown RBP18.7■□□□□ 0.58
VRK3-221ENST00000600284 PCP11498 1178 aaKnown RBP18.7■□□□□ 0.58
VRK3-221ENST00000600284 SDSP20132 328 aa18.7■□□□□ 0.58
VRK3-221ENST00000600284 RCSD1Q6JBY9 416 aa18.7■□□□□ 0.58
VRK3-221ENST00000600284 RAVER2Q9HCJ3 691 aaKnown RBP18.7■□□□□ 0.58
VRK3-221ENST00000600284 INCENPQ9NQS7 918 aa18.7■□□□□ 0.58
VRK3-221ENST00000600284 TCP11L1Q9NUJ3 509 aa18.7■□□□□ 0.58
VRK3-221ENST00000600284 ZMYND8Q9ULU4 1186 aaPredicted RBP18.7■□□□□ 0.58
VRK3-221ENST00000600284 TACC3Q9Y6A5 838 aa18.7■□□□□ 0.58
VRK3-221ENST00000600284 CCDC171Q6TFL3 1326 aa18.7■□□□□ 0.58
VRK3-221ENST00000600284 FRMPD3Q5JV73 1810 aa18.7■□□□□ 0.58
VRK3-221ENST00000600284 TRIOBPQ9H2D6 2365 aa18.69■□□□□ 0.58
VRK3-221ENST00000600284 MCCP23508 829 aa18.69■□□□□ 0.58
VRK3-221ENST00000600284 GJC2Q5T442 439 aaPredicted RBP18.69■□□□□ 0.58
VRK3-221ENST00000600284 MAMDC4Q6UXC1 1216 aa18.69■□□□□ 0.58
VRK3-221ENST00000600284 ZNF467Q7Z7K2 595 aaPredicted RBP18.69■□□□□ 0.58
VRK3-221ENST00000600284 ZNF589Q86UQ0 364 aaPredicted RBP18.69■□□□□ 0.58
VRK3-221ENST00000600284 CNPY2Q9Y2B0 182 aa18.69■□□□□ 0.58
VRK3-221ENST00000600284 SYNGAP1Q96PV0 1343 aa18.69■□□□□ 0.58
VRK3-221ENST00000600284 HIP1O00291 1037 aa18.68■□□□□ 0.58
VRK3-221ENST00000600284 RARBP10826 455 aa18.68■□□□□ 0.58
VRK3-221ENST00000600284 NT5C2P49902 561 aa18.68■□□□□ 0.58
VRK3-221ENST00000600284 NMT2O60551 498 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 ZNF865P0CJ78 1059 aaPredicted RBP18.67■□□□□ 0.58
VRK3-221ENST00000600284 AKR1A1P14550 325 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 SYN1P17600 705 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 SLC4A3P48751 1232 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 IKQ13123 557 aaPredicted RBP18.67■□□□□ 0.58
VRK3-221ENST00000600284 LRRC41Q15345 812 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 TKFCQ3LXA3 575 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 ANO1Q5XXA6 986 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 ANKRD35Q8N283 1001 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 DCAF4Q8WV16 495 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 TOMM22Q9NS69 142 aa18.67■□□□□ 0.58
VRK3-221ENST00000600284 ISY1Q9ULR0 285 aaKnown RBP18.67■□□□□ 0.58
VRK3-221ENST00000600284 SUPT16HQ9Y5B9 1047 aaKnown RBP18.67■□□□□ 0.58
VRK3-221ENST00000600284 RANBP2P49792 3224 aaKnown RBP18.66■□□□□ 0.58
VRK3-221ENST00000600284 MAGEA10P43363 369 aaPredicted RBP18.66■□□□□ 0.58
VRK3-221ENST00000600284 C1orf53Q5VUE5 145 aa18.66■□□□□ 0.58
VRK3-221ENST00000600284 SLC39A5Q6ZMH5 540 aa18.66■□□□□ 0.58
VRK3-221ENST00000600284 MFSD6Q6ZSS7 791 aa18.66■□□□□ 0.58
VRK3-221ENST00000600284 TTC14Q96N46 770 aa18.66■□□□□ 0.58
VRK3-221ENST00000600284 RNF41Q9H4P4 317 aaPredicted RBP18.66■□□□□ 0.58
VRK3-221ENST00000600284 XPNPEP3Q9NQH7 507 aa18.66■□□□□ 0.58
VRK3-221ENST00000600284 SNAI1O95863 264 aaPredicted RBP18.65■□□□□ 0.58
VRK3-221ENST00000600284 TOP1P11387 765 aaKnown RBP18.65■□□□□ 0.58
VRK3-221ENST00000600284 TAL1P17542 331 aaPredicted RBP18.65■□□□□ 0.58
VRK3-221ENST00000600284 ATN1P54259 1190 aaPredicted RBP18.65■□□□□ 0.58
VRK3-221ENST00000600284 AKNAD1Q5T1N1 836 aa18.65■□□□□ 0.58
VRK3-221ENST00000600284 KCTD1Q719H9 257 aa18.65■□□□□ 0.58
VRK3-221ENST00000600284 RNF180Q86T96 592 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms