RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ELP3Q9H9T3 547 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 JMJD4Q9H9V9 463 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-209ENST00000597423 PNMA2Q9UL42 364 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 ZDHHC9Q9Y397 364 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 SPDYE5A6NIY4 337 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 ZBTB5O15062 677 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 FDX1P10109 184 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 NLRP5P59047 1200 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 GUCY1B3Q02153 619 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 PPIL2Q13356 520 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 FOXD4L5Q5VV16 416 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-209ENST00000597423 HEATR3Q7Z4Q2 680 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 HOMER1Q86YM7 354 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 PRPF38AQ8NAV1 312 aaKnown RBP17.57■□□□□ 0.4
TRIM28-209ENST00000597423 FOXD4L4Q8WXT5 416 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-209ENST00000597423 PIGSQ96S52 555 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 NUP88Q99567 741 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-209ENST00000597423 EMILIN3Q9NT22 766 aa17.57■□□□□ 0.4
TRIM28-209ENST00000597423 hCG_1642624A0A1W2PR95 340 aa17.56■□□□□ 0.4
TRIM28-209ENST00000597423 GOLGA6L22H0YM25 854 aa17.56■□□□□ 0.4
TRIM28-209ENST00000597423 GNA11P29992 359 aa17.56■□□□□ 0.4
TRIM28-209ENST00000597423 SH3D19Q5HYK7 790 aa17.56■□□□□ 0.4
TRIM28-209ENST00000597423 BRAPQ7Z569 592 aa17.56■□□□□ 0.4
TRIM28-209ENST00000597423 MTMR8Q96EF0 704 aa17.56■□□□□ 0.4
TRIM28-209ENST00000597423 AIFM3Q96NN9 605 aa17.56■□□□□ 0.4
TRIM28-209ENST00000597423 GLT8D2Q9H1C3 349 aa17.56■□□□□ 0.4
TRIM28-209ENST00000597423 BARHL2Q9NY43 387 aa17.56■□□□□ 0.4
TRIM28-209ENST00000597423 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-209ENST00000597423 CTDP1Q9Y5B0 961 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-209ENST00000597423 ITGBL1O95965 494 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-209ENST00000597423 MMP1P03956 469 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 HMGCS2P54868 508 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 ATL3Q6DD88 541 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 PPP1R18Q6NYC8 613 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 MOB2Q70IA6 237 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 FASTKD5Q7L8L6 764 aaKnown RBP17.55■□□□□ 0.4
TRIM28-209ENST00000597423 RASGRP2Q7LDG7 609 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 SMC1BQ8NDV3 1235 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 BICD2Q8TD16 824 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 TANGO6Q9C0B7 1094 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 FOXP1Q9H334 677 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-209ENST00000597423 CPVLQ9H3G5 476 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 C6orf50Q9HD87 102 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 VPS54Q9P1Q0 977 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 PRR12Q9ULL5 1215 aa17.55■□□□□ 0.4
TRIM28-209ENST00000597423 USP17L15C9J2P7 530 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 USP17L13C9JLJ4 530 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 USP17L11C9JVI0 530 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 USP17L18D6R9N7 530 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 USP17L22D6RA61 530 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 USP17L17D6RBQ6 530 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 USP17L19D6RCP7 530 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 USP17L20D6RJB6 530 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 VCAM1P19320 739 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 KRT2P35908 639 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 NAPAP54920 295 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 USP17L24Q0WX57 530 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 CDC37Q16543 378 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-209ENST00000597423 CSPP1Q1MSJ5 1256 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 SLC35G1Q2M3R5 365 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 KIAA1755Q5JYT7 1200 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 OTUD7BQ6GQQ9 843 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 CLEC17AQ6ZS10 378 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 KIFC2Q96AC6 838 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 OPTNQ96CV9 577 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 OTUD5Q96G74 571 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 ZNF396Q96N95 335 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-209ENST00000597423 SLF1Q9BQI6 1058 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 PHF20Q9BVI0 1012 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 AMNQ9BXJ7 453 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 RPAP3Q9H6T3 665 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-209ENST00000597423 HOXC10Q9NYD6 342 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 CFAP45Q9UL16 551 aa17.54■□□□□ 0.4
TRIM28-209ENST00000597423 MYH4Q9Y623 1939 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 STXBP3O00186 592 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 ZBED4O75132 1171 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 FLOT1O75955 427 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 PTMSP20962 102 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 MRPL12P52815 198 aaKnown RBP17.53■□□□□ 0.4
TRIM28-209ENST00000597423 PABPC4Q13310 644 aaKnown RBP eCLIP17.53■□□□□ 0.4
TRIM28-209ENST00000597423 COG2Q14746 738 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 FERMT3Q86UX7 667 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 FBXO11Q86XK2 927 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 TEX2Q8IWB9 1127 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 PROCA1Q8NCQ7 364 aaPredicted RBP17.53■□□□□ 0.4
TRIM28-209ENST00000597423 CLMNQ96JQ2 1002 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 KCNJ14Q9UNX9 436 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 KCNH4Q9UQ05 1017 aa17.53■□□□□ 0.4
TRIM28-209ENST00000597423 SMCO2A6NFE2 343 aa17.52■□□□□ 0.4
TRIM28-209ENST00000597423 U2AF2P26368 475 aaKnown RBP eCLIP17.52■□□□□ 0.4
TRIM28-209ENST00000597423 KIF23Q02241 960 aaPredicted RBP17.52■□□□□ 0.4
TRIM28-209ENST00000597423 RESTQ13127 1097 aa17.52■□□□□ 0.4
TRIM28-209ENST00000597423 SNAPC2Q13487 334 aa17.52■□□□□ 0.4
TRIM28-209ENST00000597423 QRICH1Q2TAL8 776 aa17.52■□□□□ 0.4
TRIM28-209ENST00000597423 WWC2Q6AWC2 1192 aa17.52■□□□□ 0.4
TRIM28-209ENST00000597423 DIS3L2Q8IYB7 885 aaKnown RBP17.52■□□□□ 0.4
TRIM28-209ENST00000597423 GPKOWQ92917 476 aaPredicted RBP eCLIP17.52■□□□□ 0.4
TRIM28-209ENST00000597423 PCDHA4Q9UN74 947 aa17.52■□□□□ 0.4
TRIM28-209ENST00000597423 PCDHA1Q9Y5I3 950 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms