RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 CREB3L3Q68CJ9 461 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 RIOX2Q8IUF8 465 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 MB21D2Q8IYB1 491 aaPredicted RBP13.12□□□□□ -0.31
VRK3-210ENST00000596121 SHCBP1Q8NEM2 672 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 NPLOC4Q8TAT6 608 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 PXYLP1Q8TE99 480 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 DCAF4Q8WV16 495 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 TRIB2Q92519 343 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 NUDT12Q9BQG2 462 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 CNNM2Q9H8M5 875 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 RAVER2Q9HCJ3 691 aaKnown RBP13.12□□□□□ -0.31
VRK3-210ENST00000596121 GPHNQ9NQX3 736 aaPredicted RBP13.12□□□□□ -0.31
VRK3-210ENST00000596121 FLRT1Q9NZU1 646 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 TNKSO95271 1327 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 SLC15A5A6NIM6 579 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 PLA2G6O60733 806 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 COBLO75128 1261 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 IGHA2P01877 340 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 INHAP05111 366 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 GOLGA8HP0CJ92 632 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 RGS19P49795 217 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 MAP2K5Q13163 448 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 BTNL9Q6UXG8 535 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 NBPF11Q86T75 865 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 IQCA1Q86XH1 822 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 NCAPG2Q86XI2 1143 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 CCAR1Q8IX12 1150 aaKnown RBP13.11□□□□□ -0.31
VRK3-210ENST00000596121 RASEFQ8IZ41 740 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 CPXCR1Q8N123 301 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 SLAIN1Q8ND83 568 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 UNC93B1Q9H1C4 597 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 CPVLQ9H3G5 476 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 GPCPD1Q9NPB8 672 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 PRR12Q9ULL5 1215 aa13.11□□□□□ -0.31
VRK3-210ENST00000596121 ATP2A1O14983 1001 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 ZBED4O75132 1171 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 XRCC5P13010 732 aaKnown RBP13.1□□□□□ -0.31
VRK3-210ENST00000596121 CCL5P13501 91 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 NT5C2P49902 561 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 STAT2P52630 851 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 ZNF543Q08ER8 600 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 CCDC96Q2M329 555 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 SNRNP48Q6IEG0 339 aaKnown RBP13.1□□□□□ -0.31
VRK3-210ENST00000596121 PNMA1Q8ND90 353 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 IGDCC4Q8TDY8 1250 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 CHURC1Q8WUH1 139 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 SOCS4Q8WXH5 440 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 AGBL1Q96MI9 1066 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 MROH8Q9H579 483 aa13.1□□□□□ -0.31
VRK3-210ENST00000596121 ISY1Q9ULR0 285 aaKnown RBP13.1□□□□□ -0.31
VRK3-210ENST00000596121 SLC25A27O95847 323 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 HOXC6P09630 235 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 EN2P19622 333 aaPredicted RBP13.09□□□□□ -0.31
VRK3-210ENST00000596121 ADORA2AP29274 412 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 RGS2P41220 211 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 SLC4A3P48751 1232 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 CCDC178Q5BJE1 867 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 FAM160B2Q86V87 743 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 NCOA7Q8NI08 942 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 UBAC1Q9BSL1 405 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 TEX13BQ9BXU2 312 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 UBA5Q9GZZ9 404 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 KAT14Q9H8E8 782 aa13.09□□□□□ -0.31
VRK3-210ENST00000596121 BIN2Q9UBW5 565 aaPredicted RBP13.09□□□□□ -0.31
VRK3-210ENST00000596121 IFIT3O14879 490 aaKnown RBP13.08□□□□□ -0.32
VRK3-210ENST00000596121 STRNO43815 780 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 HMGCRP04035 888 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 PGK2P07205 417 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 TRDNQ13061 729 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 IKQ13123 557 aaPredicted RBP13.08□□□□□ -0.32
VRK3-210ENST00000596121 SLC35G1Q2M3R5 365 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 IFIT1BQ5T764 474 aaKnown RBP13.08□□□□□ -0.32
VRK3-210ENST00000596121 MAP3K21Q5TCX8 1036 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 SYDE2Q5VT97 1194 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 CCDC174Q6PII3 467 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 STAG2Q8N3U4 1231 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 SHISA4Q96DD7 197 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 APBA2Q99767 749 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 RANBP17Q9H2T7 1088 aaKnown RBP13.08□□□□□ -0.32
VRK3-210ENST00000596121 CWC22Q9HCG8 908 aaKnown RBP13.08□□□□□ -0.32
VRK3-210ENST00000596121 IVNS1ABPQ9Y6Y0 642 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 SMCHD1A6NHR9 2005 aa13.08□□□□□ -0.32
VRK3-210ENST00000596121 MKI67P46013 3256 aaKnown RBP13.07□□□□□ -0.32
VRK3-210ENST00000596121 FCER1AP12319 257 aa13.07□□□□□ -0.32
VRK3-210ENST00000596121 CACNB2Q08289 660 aaPredicted RBP13.07□□□□□ -0.32
VRK3-210ENST00000596121 ZNF792Q3KQV3 632 aa13.07□□□□□ -0.32
VRK3-210ENST00000596121 ADCK5Q3MIX3 580 aa13.07□□□□□ -0.32
VRK3-210ENST00000596121 CASC1Q6TDU7 716 aa13.07□□□□□ -0.32
VRK3-210ENST00000596121 RALYLQ86SE5 291 aaKnown RBP13.07□□□□□ -0.32
VRK3-210ENST00000596121 ABRAQ8N0Z2 381 aa13.07□□□□□ -0.32
VRK3-210ENST00000596121 KCNB2Q92953 911 aa13.07□□□□□ -0.32
VRK3-210ENST00000596121 MMP19Q99542 508 aa13.07□□□□□ -0.32
VRK3-210ENST00000596121 RNF208Q9H0X6 261 aa13.07□□□□□ -0.32
VRK3-210ENST00000596121 PRC1O43663 620 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 FDX1P10109 184 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 PRKAR2AP13861 404 aaKnown RBP13.06□□□□□ -0.32
VRK3-210ENST00000596121 ZKSCAN1P17029 563 aaPredicted RBP13.06□□□□□ -0.32
VRK3-210ENST00000596121 CCND3P30281 292 aaPredicted RBP13.06□□□□□ -0.32
VRK3-210ENST00000596121 CYP2C19P33261 490 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 OAZ1P54368 228 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms