RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 B4GALNT3Q6L9W6 998 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 CHURC1Q8WUH1 139 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 RUFY2Q8WXA3 655 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 RILPL2Q969X0 211 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.43□□□□□ -0.42
LIG3-212ENST00000590181 CLIP2Q9UDT6 1046 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 PPP1R9AQ9ULJ8 1098 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 CCDC171Q6TFL3 1326 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 TSPY2A6NKD2 308 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 VWA5AO00534 786 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 FGAP02671 866 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 HSPD1P10809 573 aaKnown RBP12.42□□□□□ -0.42
LIG3-212ENST00000590181 FCER1AP12319 257 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 SDSP20132 328 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 ATN1P54259 1190 aaPredicted RBP12.42□□□□□ -0.42
LIG3-212ENST00000590181 TFAP4Q01664 338 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 WDR78Q5VTH9 848 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 DPP9Q86TI2 863 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 FAM160B2Q86V87 743 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 RIOX2Q8IUF8 465 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 MSL3Q8N5Y2 521 aaKnown RBP12.42□□□□□ -0.42
LIG3-212ENST00000590181 GMCL1Q96IK5 515 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 SEC62Q99442 399 aaKnown RBP12.42□□□□□ -0.42
LIG3-212ENST00000590181 SLF1Q9BQI6 1058 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 MOV10L1Q9BXT6 1211 aaKnown RBP12.42□□□□□ -0.42
LIG3-212ENST00000590181 SENP6Q9GZR1 1112 aaPredicted RBP12.42□□□□□ -0.42
LIG3-212ENST00000590181 DIAPH3Q9NSV4 1193 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 BTBD7Q9P203 1132 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 PRKAG2Q9UGJ0 569 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 FBXO40Q9UH90 709 aa12.42□□□□□ -0.42
LIG3-212ENST00000590181 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIG3-212ENST00000590181 CTDP1Q9Y5B0 961 aaPredicted RBP12.42□□□□□ -0.42
LIG3-212ENST00000590181 ZNFX1Q9P2E3 1918 aaKnown RBP12.42□□□□□ -0.42
LIG3-212ENST00000590181 POTEB2H3BUK9 544 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 ZBED4O75132 1171 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 STAT3P40763 770 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 NOVP48745 357 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 RTP1P59025 263 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 EVX2Q03828 476 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 POTEEQ6S8J3 1075 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.41□□□□□ -0.42
LIG3-212ENST00000590181 SPICE1Q8N0Z3 855 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 CEP95Q96GE4 821 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 TEX13BQ9BXU2 312 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 MAF1Q9H063 256 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 FLRT1Q9NZU1 646 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 DDX20Q9UHI6 824 aaKnown RBP12.41□□□□□ -0.42
LIG3-212ENST00000590181 PLXNA1Q9UIW2 1896 aa12.41□□□□□ -0.42
LIG3-212ENST00000590181 COL11A1P12107 1806 aaPredicted RBP12.4□□□□□ -0.42
LIG3-212ENST00000590181 ERCC3P19447 782 aa12.4□□□□□ -0.42
LIG3-212ENST00000590181 CNGA1P29973 690 aa12.4□□□□□ -0.42
LIG3-212ENST00000590181 KCTD2Q14681 263 aa12.4□□□□□ -0.42
LIG3-212ENST00000590181 MFSD6Q6ZSS7 791 aa12.4□□□□□ -0.42
LIG3-212ENST00000590181 MAFAQ8NHW3 353 aaPredicted RBP12.4□□□□□ -0.42
LIG3-212ENST00000590181 DSCC1Q9BVC3 393 aa12.4□□□□□ -0.42
LIG3-212ENST00000590181 ATP11BQ9Y2G3 1177 aa12.4□□□□□ -0.42
LIG3-212ENST00000590181 RAD50Q92878 1312 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 DNM1LO00429 736 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 ZNF213O14771 459 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 RANBP6O60518 1105 aaKnown RBP12.39□□□□□ -0.43
LIG3-212ENST00000590181 NDUFB10O96000 172 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 IGHA2P01877 340 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 BMP3P12645 472 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 STAT2P52630 851 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 NMIQ13287 307 aaPredicted RBP12.39□□□□□ -0.43
LIG3-212ENST00000590181 PLS1Q14651 629 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 TKFCQ3LXA3 575 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 KIAA1755Q5JYT7 1200 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 FAM83BQ5T0W9 1011 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 AKNAD1Q5T1N1 836 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 NCAPG2Q86XI2 1143 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 CHST13Q8NET6 341 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 STAG1Q8WVM7 1258 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 ESR2Q92731 530 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 FAM227BQ96M60 508 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 CNNM2Q9H8M5 875 aa12.39□□□□□ -0.43
LIG3-212ENST00000590181 PRDM5Q9NQX1 630 aaPredicted RBP12.39□□□□□ -0.43
LIG3-212ENST00000590181 A0A0D9SFI3 127 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 RAD21O60216 631 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 PRDM1O75626 825 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 ADORA2AP29274 412 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 SLC1A4P43007 532 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 TMEM132BQ14DG7 1078 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 SLFN13Q68D06 897 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 ZNF467Q7Z7K2 595 aaPredicted RBP12.38□□□□□ -0.43
LIG3-212ENST00000590181 DCAF4Q8WV16 495 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 ATG4CQ96DT6 458 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 CDX2Q99626 313 aaPredicted RBP12.38□□□□□ -0.43
LIG3-212ENST00000590181 SLC38A10Q9HBR0 1119 aa12.38□□□□□ -0.43
LIG3-212ENST00000590181 ZNF214Q9UL59 606 aaPredicted RBP12.38□□□□□ -0.43
LIG3-212ENST00000590181 KBTBD13C9JR72 458 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 SMIM22K7EJ46 135 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 FOXP2O15409 715 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 TOP1P11387 765 aaKnown RBP12.37□□□□□ -0.43
LIG3-212ENST00000590181 CYBAP13498 195 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 CYP2C19P33261 490 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 IMMTQ16891 758 aaKnown RBP12.37□□□□□ -0.43
LIG3-212ENST00000590181 C9orf50Q5SZB4 431 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 TTC22Q5TAA0 569 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 CCDC129Q6ZRS4 1044 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms