RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ADAMTSL1Q8N6G6 1762 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 PATL2C9JE40 543 aaKnown RBP6.3□□□□□ -1.4
LIG3-210ENST00000588109 EPB41L2O43491 1005 aaKnown RBP6.3□□□□□ -1.4
LIG3-210ENST00000588109 PRKAB2O43741 272 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 ZKSCAN1P17029 563 aaPredicted RBP6.3□□□□□ -1.4
LIG3-210ENST00000588109 SMTNP53814 917 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 PICALMQ13492 652 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 IMMTQ16891 758 aaKnown RBP6.3□□□□□ -1.4
LIG3-210ENST00000588109 TBC1D10BQ4KMP7 808 aaPredicted RBP6.3□□□□□ -1.4
LIG3-210ENST00000588109 APOBEC3HQ6NTF7 200 aaKnown RBP6.3□□□□□ -1.4
LIG3-210ENST00000588109 CDC42EP5Q6NZY7 148 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 MAPKAPK5Q8IW41 473 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 IFNL3Q8IZI9 196 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.3□□□□□ -1.4
LIG3-210ENST00000588109 MAP4K1Q92918 833 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 GAS2L1Q99501 681 aaPredicted RBP6.3□□□□□ -1.4
LIG3-210ENST00000588109 USP26Q9BXU7 913 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 GPRC5DQ9NZD1 345 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 PCDHAC2Q9Y5I4 1007 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 SRCAPQ6ZRS2 3230 aa6.3□□□□□ -1.4
LIG3-210ENST00000588109 RPAP1Q9BWH6 1393 aaPredicted RBP6.3□□□□□ -1.4
LIG3-210ENST00000588109 SHTN1A0MZ66 631 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 CLRN2A0PK11 232 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 A6NJY4 79 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 GSG1L2A8MUP6 293 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 MINDY4BA8MYZ0 360 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 TMEM229AB2RXF0 380 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 ZNF213O14771 459 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 WFS1O76024 890 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 FGAP02671 866 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 POLR3DP05423 398 aaPredicted RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 SLC3A2P08195 630 aaKnown RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 HSPA4P34932 840 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 PHKA2P46019 1235 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 CACNB3P54284 484 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 RHBDL3P58872 404 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 ZNF280AP59817 542 aaPredicted RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 HAND2P61296 217 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 KIF4BQ2VIQ3 1234 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 SLC4A8Q2Y0W8 1093 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 WDR44Q5JSH3 913 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 CREB3L3Q68CJ9 461 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 ZSCAN29Q8IWY8 852 aaPredicted RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 CCDC155Q8N6L0 562 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 TGFBRAP1Q8WUH2 860 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 PRMT6Q96LA8 375 aaPredicted RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 TDRD3Q9H7E2 651 aaKnown RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 VEZTQ9HBM0 779 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 EPB41L4AQ9HCS5 686 aaPredicted RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 DCP1AQ9NPI6 582 aaPredicted RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 TIMMDC1Q9NPL8 285 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 ATP8A2Q9NTI2 1148 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 MCM9Q9NXL9 1143 aa6.29□□□□□ -1.4
LIG3-210ENST00000588109 ARPP21Q9UBL0 812 aaPredicted RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 SAP30BPQ9UHR5 308 aaKnown RBP6.29□□□□□ -1.4
LIG3-210ENST00000588109 UTRNP46939 3433 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 ZMYM6O95789 1325 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 FLT1P17948 1338 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 NAV1Q8NEY1 1877 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 ECM29Q5VYK3 1845 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 IQCA1LA6NCM1 817 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 GLTPD2A6NH11 291 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 SPATA31C2B4DYI2 1134 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 TCP10L2B9ZVM9 353 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 USP17L12C9JPN9 530 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 USP17L21D6R901 530 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 WNT10BO00744 389 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 SLC27A2O14975 620 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 FOXP2O15409 715 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 PPFIA3O75145 1194 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 WDHD1O75717 1129 aaPredicted RBP6.28□□□□□ -1.4
LIG3-210ENST00000588109 EPS15P42566 896 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 TNNI2P48788 182 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 VEGFBP49765 207 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 CLDN10P78369 228 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 TCP10Q12799 353 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 NFIAQ12857 509 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 TRDNQ13061 729 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 KRT32Q14532 448 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 NECTIN1Q15223 517 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 ALX1Q15699 326 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 NBPF9Q3BBW0 867 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 GIMAP6Q6P9H5 292 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 RIPOR1Q6ZS17 1223 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 STK11IPQ8N1F8 1099 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 RHBDD1Q8TEB9 315 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 IRF7Q92985 503 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 TBC1D32Q96NH3 1257 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 HINFPQ9BQA5 517 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 NIFKQ9BYG3 293 aaKnown RBP6.28□□□□□ -1.4
LIG3-210ENST00000588109 ADARB2Q9NS39 739 aaKnown RBP6.28□□□□□ -1.4
LIG3-210ENST00000588109 ZNF358Q9NW07 568 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 ZNF70Q9UC06 446 aaPredicted RBP6.28□□□□□ -1.4
LIG3-210ENST00000588109 HACL1Q9UJ83 578 aa6.28□□□□□ -1.4
LIG3-210ENST00000588109 CYP2D7A0A087X1C5 515 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 SLC35F4A4IF30 521 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 CDK2AP1O14519 115 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 ENTPD3O75355 529 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 EGFRP00533 1210 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 HLA-DOAP06340 250 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms