RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 TSPY3P0CV98 308 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 TSPY8P0CW00 308 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 SLC19A1P41440 591 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 HAND2P61296 217 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 PTH1RQ03431 593 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 PABPC4Q13310 644 aaKnown RBP eCLIP9.48□□□□□ -0.89
SMAD4-204ENST00000586253 MTMR2Q13614 643 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 NOM1Q5C9Z4 860 aaKnown RBP9.48□□□□□ -0.89
SMAD4-204ENST00000586253 USP17L2Q6R6M4 530 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 LIAT1Q6ZQX7 453 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 MFSD6Q6ZSS7 791 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 TBC1D10CQ8IV04 446 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 FAM43AQ8N2R8 423 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 NEDD1Q8NHV4 660 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 FEZ1Q99689 392 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.48□□□□□ -0.89
SMAD4-204ENST00000586253 TMOD4Q9NZQ9 345 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 AGTPBP1Q9UPW5 1226 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 TMX2Q9Y320 296 aa9.48□□□□□ -0.89
SMAD4-204ENST00000586253 TSPY2A6NKD2 308 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 EPB41L2O43491 1005 aaKnown RBP9.47□□□□□ -0.89
SMAD4-204ENST00000586253 TRPA1O75762 1119 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 REC8O95072 547 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 CTCFP49711 727 aaPredicted RBP9.47□□□□□ -0.89
SMAD4-204ENST00000586253 HMGCS2P54868 508 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 TFAP4Q01664 338 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 GPAT2Q6NUI2 795 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 SIAH1Q8IUQ4 282 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 STK11IPQ8N1F8 1099 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 ANKLE1Q8NAG6 615 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 ACER1Q8TDN7 264 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 LPAR1Q92633 364 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 ESR2Q92731 530 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 MKL1Q969V6 931 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 CNNM2Q9H8M5 875 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 ANO2Q9NQ90 1003 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 TCP11L1Q9NUJ3 509 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 MTMR4Q9NYA4 1195 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 NYAP2Q9P242 653 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 RBM8AQ9Y5S9 174 aaKnown RBP9.47□□□□□ -0.89
SMAD4-204ENST00000586253 TACC3Q9Y6A5 838 aa9.47□□□□□ -0.89
SMAD4-204ENST00000586253 A0A1W2PRG0 241 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 PDHXO00330 501 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 FOXN1O15353 648 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 RANBP6O60518 1105 aaKnown RBP9.46□□□□□ -0.9
SMAD4-204ENST00000586253 EIF5BO60841 1220 aaKnown RBP9.46□□□□□ -0.9
SMAD4-204ENST00000586253 TTLL1O95922 423 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 CYP21A2P08686 494 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 EEF2P13639 858 aaKnown RBP9.46□□□□□ -0.9
SMAD4-204ENST00000586253 HOXA7P31268 230 aaPredicted RBP9.46□□□□□ -0.9
SMAD4-204ENST00000586253 NOVP48745 357 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 SLC4A3P48751 1232 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 MAP2K5Q13163 448 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 TAF1CQ15572 869 aaPredicted RBP9.46□□□□□ -0.9
SMAD4-204ENST00000586253 GADL1Q6ZQY3 521 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 CEP95Q96GE4 821 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 PARK7Q99497 189 aaKnown RBP9.46□□□□□ -0.9
SMAD4-204ENST00000586253 KRT23Q9C075 422 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 VCPKMTQ9H867 229 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 ZFYVE28Q9HCC9 887 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 INCENPQ9NQS7 918 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 NEDD4P46934 1319 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 MYH4Q9Y623 1939 aa9.46□□□□□ -0.9
SMAD4-204ENST00000586253 TLR2O60603 784 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 S1PR4O95977 384 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 CFHP08603 1231 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 HSPA8P11142 646 aaKnown RBP9.45□□□□□ -0.9
SMAD4-204ENST00000586253 VCAM1P19320 739 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 PRR20EP86478 221 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 PRR20CP86479 221 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 PRR20DP86480 221 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 PRR20BP86481 221 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 PRR20AP86496 221 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 TRDNQ13061 729 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 CRHR2Q13324 411 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 NECTIN1Q15223 517 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 CCDC178Q5BJE1 867 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 FAM47AQ5JRC9 791 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 RRP12Q5JTH9 1297 aaKnown RBP9.45□□□□□ -0.9
SMAD4-204ENST00000586253 PLA2G2CQ5R387 149 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 TREML2Q5T2D2 321 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 RNF20Q5VTR2 975 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 CLEC10AQ8IUN9 316 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 PXYLP1Q8TE99 480 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 TTC14Q96N46 770 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 GOPCQ9HD26 462 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 IL17RBQ9NRM6 502 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 TOMM22Q9NS69 142 aa9.45□□□□□ -0.9
SMAD4-204ENST00000586253 USP17L15C9J2P7 530 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 USP17L13C9JLJ4 530 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 USP17L11C9JVI0 530 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 USP17L18D6R9N7 530 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 USP17L22D6RA61 530 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 USP17L17D6RBQ6 530 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 USP17L19D6RCP7 530 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 USP17L20D6RJB6 530 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 WDR46O15213 610 aaKnown RBP9.44□□□□□ -0.9
SMAD4-204ENST00000586253 KDM4AO75164 1064 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 TBC1D8O95759 1140 aa9.44□□□□□ -0.9
SMAD4-204ENST00000586253 ATP2B2Q01814 1243 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms