RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CSRNP2Q9H175 543 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 PCDHA6Q9UN73 950 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 PCDHA8Q9Y5H6 950 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 BECN2A8MW95 431 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 PTMAP06454 111 aaKnown RBP16.18■□□□□ 0.18
LIG3-205ENST00000585941 EIF6P56537 245 aaKnown RBP16.18■□□□□ 0.18
LIG3-205ENST00000585941 IQCB1Q15051 598 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 ABCB5Q2M3G0 1257 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 LONRF3Q496Y0 759 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 ZSCAN30Q86W11 494 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 HOMER1Q86YM7 354 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 FAM151AQ8WW52 585 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 PIGSQ96S52 555 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 TAOK3Q9H2K8 898 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 CD2APQ9Y5K6 639 aa16.18■□□□□ 0.18
LIG3-205ENST00000585941 COL4A5P29400 1685 aa16.17■□□□□ 0.18
LIG3-205ENST00000585941 PNMA6FA0A0J9YX94 578 aa16.17■□□□□ 0.18
LIG3-205ENST00000585941 SMCO2A6NFE2 343 aa16.17■□□□□ 0.18
LIG3-205ENST00000585941 PLCB2Q00722 1185 aa16.17■□□□□ 0.18
LIG3-205ENST00000585941 SPDYE2Q495Y8 402 aa16.17■□□□□ 0.18
LIG3-205ENST00000585941 C11orf57Q6ZUT1 292 aaPredicted RBP16.17■□□□□ 0.18
LIG3-205ENST00000585941 JDP2Q8WYK2 163 aa16.17■□□□□ 0.18
LIG3-205ENST00000585941 CSRNP1Q96S65 589 aa16.17■□□□□ 0.18
LIG3-205ENST00000585941 VAT1LQ9HCJ6 419 aa16.17■□□□□ 0.18
LIG3-205ENST00000585941 ZNF70Q9UC06 446 aaPredicted RBP16.17■□□□□ 0.18
LIG3-205ENST00000585941 FRMPD2Q68DX3 1309 aaPredicted RBP16.17■□□□□ 0.18
LIG3-205ENST00000585941 GOLGA6L6A8MZA4 724 aa16.16■□□□□ 0.18
LIG3-205ENST00000585941 POLR2DO15514 142 aaKnown RBP16.16■□□□□ 0.18
LIG3-205ENST00000585941 MYO1BO43795 1136 aa16.16■□□□□ 0.18
LIG3-205ENST00000585941 TPM3P06753 285 aa16.16■□□□□ 0.18
LIG3-205ENST00000585941 LONP1P36776 959 aaKnown RBP16.16■□□□□ 0.18
LIG3-205ENST00000585941 ATP2B2Q01814 1243 aa16.16■□□□□ 0.18
LIG3-205ENST00000585941 GRIN1Q05586 938 aa16.16■□□□□ 0.18
LIG3-205ENST00000585941 TNIP1Q15025 636 aa16.16■□□□□ 0.18
LIG3-205ENST00000585941 NONOQ15233 471 aaKnown RBP eCLIP16.16■□□□□ 0.18
LIG3-205ENST00000585941 CCDC96Q2M329 555 aa16.16■□□□□ 0.18
LIG3-205ENST00000585941 NOM1Q5C9Z4 860 aaKnown RBP16.16■□□□□ 0.18
LIG3-205ENST00000585941 RBM26Q5T8P6 1007 aaKnown RBP16.16■□□□□ 0.18
LIG3-205ENST00000585941 RASGRP2Q7LDG7 609 aa16.16■□□□□ 0.18
LIG3-205ENST00000585941 UBA5Q9GZZ9 404 aa16.16■□□□□ 0.18
LIG3-205ENST00000585941 ATF5Q9Y2D1 282 aaPredicted RBP16.16■□□□□ 0.18
LIG3-205ENST00000585941 EEF2P13639 858 aaKnown RBP16.15■□□□□ 0.18
LIG3-205ENST00000585941 MCM7P33993 719 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 ICA1Q05084 483 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 CIAPIN1Q6FI81 312 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 SARM1Q6SZW1 724 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.15■□□□□ 0.18
LIG3-205ENST00000585941 FAM83AQ86UY5 434 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 REXO1Q8N1G1 1221 aaKnown RBP16.15■□□□□ 0.18
LIG3-205ENST00000585941 GMCL1P1Q8NEA9 526 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 GLT8D2Q9H1C3 349 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 CPVLQ9H3G5 476 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 GPCPD1Q9NPB8 672 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 ARFGEF1Q9Y6D6 1849 aa16.15■□□□□ 0.18
LIG3-205ENST00000585941 SMTNL1A8MU46 457 aa16.14■□□□□ 0.18
LIG3-205ENST00000585941 PRPHP41219 470 aa16.14■□□□□ 0.18
LIG3-205ENST00000585941 TPM4P67936 248 aa16.14■□□□□ 0.18
LIG3-205ENST00000585941 MDM2Q00987 491 aaPredicted RBP16.14■□□□□ 0.18
LIG3-205ENST00000585941 POSTNQ15063 836 aa16.14■□□□□ 0.18
LIG3-205ENST00000585941 SPECC1Q5M775 1068 aa16.14■□□□□ 0.18
LIG3-205ENST00000585941 CLEC10AQ8IUN9 316 aa16.14■□□□□ 0.18
LIG3-205ENST00000585941 ADGRF4Q8IZF3 695 aa16.14■□□□□ 0.18
LIG3-205ENST00000585941 MTMR8Q96EF0 704 aa16.14■□□□□ 0.18
LIG3-205ENST00000585941 JMJD4Q9H9V9 463 aa16.14■□□□□ 0.18
LIG3-205ENST00000585941 LTBP3Q9NS15 1303 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 VWA3AA6NCI4 1184 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 WNT7AO00755 349 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 SLFN14P0C7P3 912 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 RPS12P25398 132 aaKnown RBP16.14■□□□□ 0.17
LIG3-205ENST00000585941 MSNP26038 577 aaKnown RBP16.14■□□□□ 0.17
LIG3-205ENST00000585941 TXLNAP40222 546 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 ADCY7P51828 1080 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 CXCL9Q07325 125 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 SEPT2Q15019 361 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 NT5DC1Q5TFE4 455 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 C4orf32Q8N8J7 132 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 TRIML1Q8N9V2 468 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 SYMPKQ92797 1274 aaKnown RBP16.14■□□□□ 0.17
LIG3-205ENST00000585941 GMCL1Q96IK5 515 aa16.14■□□□□ 0.17
LIG3-205ENST00000585941 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.14■□□□□ 0.17
LIG3-205ENST00000585941 FAM196BA6NMK8 535 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 TCP10L2B9ZVM9 353 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 ZBTB5O15062 677 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 ACTN4O43707 911 aaKnown RBP16.13■□□□□ 0.17
LIG3-205ENST00000585941 TBC1D12O60347 775 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 SMC2O95347 1197 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 SLC1A4P43007 532 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 PNOCQ13519 176 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 INF2Q27J81 1249 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 DPCR1Q3MIW9 517 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 SLFN13Q68D06 897 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 DHX40Q8IX18 779 aaKnown RBP16.13■□□□□ 0.17
LIG3-205ENST00000585941 RASGRP4Q8TDF6 673 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 ERCC4Q92889 916 aaPredicted RBP16.13■□□□□ 0.17
LIG3-205ENST00000585941 TRIM5Q9C035 493 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 SERTAD1Q9UHV2 236 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 DACH1Q9UI36 760 aa16.13■□□□□ 0.17
LIG3-205ENST00000585941 IKBKBO14920 756 aa16.12■□□□□ 0.17
LIG3-205ENST00000585941 ADAMTS3O15072 1205 aa16.12■□□□□ 0.17
LIG3-205ENST00000585941 CDC25BP30305 580 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms