RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 MAP3K14Q99558 947 aa12.74□□□□□ -0.37
TOP3A-216ENST00000583804 UBA5Q9GZZ9 404 aa12.74□□□□□ -0.37
TOP3A-216ENST00000583804 FBXO28Q9NVF7 368 aa12.74□□□□□ -0.37
TOP3A-216ENST00000583804 MAD2L2Q9UI95 211 aa12.74□□□□□ -0.37
TOP3A-216ENST00000583804 FEM1BQ9UK73 627 aa12.74□□□□□ -0.37
TOP3A-216ENST00000583804 HPS5Q9UPZ3 1129 aa12.74□□□□□ -0.37
TOP3A-216ENST00000583804 CCDC196A0A1B0GTZ2 297 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 KLRF2D3W0D1 207 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 IGF2BP3O00425 579 aaKnown RBP eCLIP12.73□□□□□ -0.37
TOP3A-216ENST00000583804 DHX16O60231 1041 aaKnown RBP12.73□□□□□ -0.37
TOP3A-216ENST00000583804 HOXA7P31268 230 aaPredicted RBP12.73□□□□□ -0.37
TOP3A-216ENST00000583804 SLC16A2P36021 539 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 GNAQP50148 359 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 STAT2P52630 851 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 CACNB1Q02641 598 aaPredicted RBP12.73□□□□□ -0.37
TOP3A-216ENST00000583804 SCRN1Q12765 414 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 COG2Q14746 738 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 REM2Q8IYK8 340 aaPredicted RBP12.73□□□□□ -0.37
TOP3A-216ENST00000583804 CMTR1Q8N1G2 835 aaKnown RBP12.73□□□□□ -0.37
TOP3A-216ENST00000583804 CHURC1Q8WUH1 139 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 P2RX7Q99572 595 aaKnown RBP12.73□□□□□ -0.37
TOP3A-216ENST00000583804 SLF1Q9BQI6 1058 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 ASCC2Q9H1I8 757 aaPredicted RBP12.73□□□□□ -0.37
TOP3A-216ENST00000583804 CPVLQ9H3G5 476 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 VAT1LQ9HCJ6 419 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 RBM28Q9NW13 759 aaKnown RBP12.73□□□□□ -0.37
TOP3A-216ENST00000583804 PNMA3Q9UL41 463 aa12.73□□□□□ -0.37
TOP3A-216ENST00000583804 JAK2O60674 1132 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PFKFB2O60825 505 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 CYP2C8P10632 490 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 CDC27P30260 824 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 ADD1P35611 737 aaKnown RBP12.72□□□□□ -0.37
TOP3A-216ENST00000583804 RCAN1P53805 252 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 FAM160B2Q86V87 743 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 CCDC82Q8N4S0 544 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PRPF38AQ8NAV1 312 aaKnown RBP12.72□□□□□ -0.37
TOP3A-216ENST00000583804 ZSCAN31Q96LW9 406 aaPredicted RBP12.72□□□□□ -0.37
TOP3A-216ENST00000583804 LZTS2Q9BRK4 669 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 HOXC10Q9NYD6 342 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 SLC45A1Q9Y2W3 748 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 CTDP1Q9Y5B0 961 aaPredicted RBP12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PTPRFP10586 1907 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 CPLX1O14810 134 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PLEKHA8P1O95397 391 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 DSG3P32926 999 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PPP2R5BQ15173 497 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 TAF1CQ15572 869 aaPredicted RBP12.72□□□□□ -0.37
TOP3A-216ENST00000583804 SYDE2Q5VT97 1194 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 SMCR8Q8TEV9 937 aaPredicted RBP12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PIBF1Q8WXW3 757 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 GTF3C6Q969F1 213 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 DDX11Q96FC9 970 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PARK7Q99497 189 aaKnown RBP12.72□□□□□ -0.37
TOP3A-216ENST00000583804 SH2B1Q9NRF2 756 aaPredicted RBP12.72□□□□□ -0.37
TOP3A-216ENST00000583804 FAM217BQ9NTX9 383 aaPredicted RBP12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PPP1R9AQ9ULJ8 1098 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PRR12Q9ULL5 1215 aa12.72□□□□□ -0.37
TOP3A-216ENST00000583804 PLA2G6O60733 806 aa12.71□□□□□ -0.38
TOP3A-216ENST00000583804 SNAP25P60880 206 aa12.71□□□□□ -0.38
TOP3A-216ENST00000583804 CPLX2Q6PUV4 134 aaKnown RBP12.71□□□□□ -0.38
TOP3A-216ENST00000583804 BTNL9Q6UXG8 535 aa12.71□□□□□ -0.38
TOP3A-216ENST00000583804 TMTC3Q6ZXV5 915 aa12.71□□□□□ -0.38
TOP3A-216ENST00000583804 ADGRF4Q8IZF3 695 aa12.71□□□□□ -0.38
TOP3A-216ENST00000583804 SRBD1Q8N5C6 995 aaKnown RBP12.71□□□□□ -0.38
TOP3A-216ENST00000583804 DNAJC5GQ8N7S2 189 aa12.71□□□□□ -0.38
TOP3A-216ENST00000583804 ATG4CQ96DT6 458 aa12.71□□□□□ -0.38
TOP3A-216ENST00000583804 ZCCHC17Q9NP64 241 aaKnown RBP12.71□□□□□ -0.38
TOP3A-216ENST00000583804 LOC285556D6RIA3 1793 aa12.7□□□□□ -0.38
TOP3A-216ENST00000583804 ZBED4O75132 1171 aa12.7□□□□□ -0.38
TOP3A-216ENST00000583804 ALDH1A1P00352 501 aa12.7□□□□□ -0.38
TOP3A-216ENST00000583804 HERVK_113P62684 666 aa12.7□□□□□ -0.38
TOP3A-216ENST00000583804 CUL4AQ13619 759 aa12.7□□□□□ -0.38
TOP3A-216ENST00000583804 FOXD4L5Q5VV16 416 aaPredicted RBP12.7□□□□□ -0.38
TOP3A-216ENST00000583804 NBPF11Q86T75 865 aa12.7□□□□□ -0.38
TOP3A-216ENST00000583804 HOMER1Q86YM7 354 aa12.7□□□□□ -0.38
TOP3A-216ENST00000583804 FOXD4L4Q8WXT5 416 aaPredicted RBP12.7□□□□□ -0.38
TOP3A-216ENST00000583804 ZFYVE28Q9HCC9 887 aa12.7□□□□□ -0.38
TOP3A-216ENST00000583804 SPDYE16A6NNV3 312 aaPredicted RBP12.69□□□□□ -0.38
TOP3A-216ENST00000583804 VWA5AO00534 786 aa12.69□□□□□ -0.38
TOP3A-216ENST00000583804 CYTH3O43739 400 aa12.69□□□□□ -0.38
TOP3A-216ENST00000583804 CCDC174Q6PII3 467 aa12.69□□□□□ -0.38
TOP3A-216ENST00000583804 PHKBQ93100 1093 aa12.69□□□□□ -0.38
TOP3A-216ENST00000583804 PAGR1Q9BTK6 254 aa12.69□□□□□ -0.38
TOP3A-216ENST00000583804 RIOX1Q9H6W3 641 aa12.69□□□□□ -0.38
TOP3A-216ENST00000583804 JMJD4Q9H9V9 463 aa12.69□□□□□ -0.38
TOP3A-216ENST00000583804 SMC3Q9UQE7 1217 aa12.69□□□□□ -0.38
TOP3A-216ENST00000583804 NID2Q14112 1375 aa12.69□□□□□ -0.38
TOP3A-216ENST00000583804 MYPNQ86TC9 1320 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 hCG_1642624A0A1W2PR95 340 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 PTPDC1A2A3K4 754 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 CA12O43570 354 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 TRPA1O75762 1119 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 CDKL5O76039 1030 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 CTDNEP1O95476 244 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 TBC1D8O95759 1140 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 SMARCA1P28370 1054 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 GJB2P29033 226 aa12.68□□□□□ -0.38
TOP3A-216ENST00000583804 GCLCP48506 637 aaPredicted RBP12.68□□□□□ -0.38
TOP3A-216ENST00000583804 AKAP17AQ02040 695 aaKnown RBP12.68□□□□□ -0.38
TOP3A-216ENST00000583804 CRHR2Q13324 411 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms