RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 LAPTM5Q13571 262 aa6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 ZNF326Q5BKZ1 582 aaKnown RBP6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 ZNF526Q8TF50 670 aaPredicted RBP6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 ZNF747Q9BV97 191 aa6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 HS3ST3A1Q9Y663 406 aa6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 PMF1-BGLAPU3KQ54 211 aa6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 IRS2Q9Y4H2 1338 aa6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 SHISA3A0PJX4 238 aa6.24□□□□□ -1.41
SMCHD1-209ENST00000583441 GSTT1P30711 240 aa6.24□□□□□ -1.41
SMCHD1-209ENST00000583441 ITGAEP38570 1179 aa6.24□□□□□ -1.41
SMCHD1-209ENST00000583441 TARBP2Q15633 366 aaKnown RBP6.24□□□□□ -1.41
SMCHD1-209ENST00000583441 GALNT18Q6P9A2 607 aa6.24□□□□□ -1.41
SMCHD1-209ENST00000583441 TMC7Q7Z402 723 aa6.24□□□□□ -1.41
SMCHD1-209ENST00000583441 SAPCD2Q86UD0 394 aa6.24□□□□□ -1.41
SMCHD1-209ENST00000583441 HHIPL1Q96JK4 782 aa6.24□□□□□ -1.41
SMCHD1-209ENST00000583441 PPM1HQ9ULR3 514 aa6.24□□□□□ -1.41
SMCHD1-209ENST00000583441 SSU72P8A0A1W2PR75 194 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 SH3D21A4FU49 640 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 E9PSI1 815 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 TREHO43280 583 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 PLATP00750 562 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 KLF10Q13118 480 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 ZNF575Q86XF7 245 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 RNF141Q8WVD5 230 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 GAL3ST3Q96A11 431 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 ALKBH8Q96BT7 664 aaKnown RBP6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 PRDM14Q9GZV8 571 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 TAF6LQ9Y6J9 622 aa6.23□□□□□ -1.41
SMCHD1-209ENST00000583441 AMHP03971 560 aa6.22□□□□□ -1.41
SMCHD1-209ENST00000583441 PLA2G1BP04054 148 aaKnown RBP6.22□□□□□ -1.41
SMCHD1-209ENST00000583441 FOXO4P98177 505 aa6.22□□□□□ -1.41
SMCHD1-209ENST00000583441 FMR1Q06787 632 aaKnown RBP eCLIP6.22□□□□□ -1.41
SMCHD1-209ENST00000583441 CBX2Q14781 532 aaPredicted RBP6.22□□□□□ -1.41
SMCHD1-209ENST00000583441 EAPPQ56P03 285 aaPredicted RBP6.22□□□□□ -1.41
SMCHD1-209ENST00000583441 MCATQ8IVS2 390 aaKnown RBP6.22□□□□□ -1.41
SMCHD1-209ENST00000583441 ASCC2Q9H1I8 757 aaPredicted RBP6.22□□□□□ -1.41
SMCHD1-209ENST00000583441 TSC22D4Q9Y3Q8 395 aa6.22□□□□□ -1.41
SMCHD1-209ENST00000583441 ZNF200P98182 395 aaPredicted RBP6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 PDE4BQ07343 736 aa6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 SMN1Q16637 294 aaKnown RBP6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 ZC3H14Q6PJT7 736 aaKnown RBP6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 RPTNQ6XPR3 784 aa6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 CARFQ8N187 725 aa6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 USHBP1Q8N6Y0 703 aa6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 GIPC2Q8TF65 315 aa6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 FOXP3Q9BZS1 431 aa6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 ST6GALNAC2Q9UJ37 374 aa6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 ING1Q9UK53 422 aaPredicted RBP6.21□□□□□ -1.42
SMCHD1-209ENST00000583441 WTIPA6NIX2 430 aaPredicted RBP6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 GFRA2O00451 464 aa6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 CELA3AP09093 270 aa6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 ZNF16P17020 682 aaPredicted RBP6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 TGFB2P61812 414 aa6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 CYP4F8P98187 520 aa6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 ATP2B2Q01814 1243 aa6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 KIR3DS1Q14943 382 aa6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 TBC1D10BQ4KMP7 808 aaPredicted RBP6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 FBXO33Q7Z6M2 555 aa6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 CYB5D2Q8WUJ1 264 aa6.2□□□□□ -1.42
SMCHD1-209ENST00000583441 PRKCAP17252 672 aa6.19□□□□□ -1.42
SMCHD1-209ENST00000583441 DSC3Q14574 896 aa6.19□□□□□ -1.42
SMCHD1-209ENST00000583441 PLEKHN1Q494U1 663 aaPredicted RBP6.19□□□□□ -1.42
SMCHD1-209ENST00000583441 FAN1Q9Y2M0 1017 aa6.19□□□□□ -1.42
SMCHD1-209ENST00000583441 P4HBP07237 508 aaKnown RBP6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 MAPKAPK2P49137 400 aa6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 PCBP3P57721 371 aaKnown RBP6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 HNRNPA0Q13151 305 aaKnown RBP6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 HSF5Q4G112 596 aaPredicted RBP6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 ENOX1Q8TC92 643 aaKnown RBP6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 ZNF428Q96B54 188 aa6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 NAF1Q96HR8 494 aaKnown RBP6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 TNFRSF10DQ9UBN6 386 aa6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 TCFL5Q9UL49 500 aa6.18□□□□□ -1.42
SMCHD1-209ENST00000583441 PRPF40AO75400 957 aaKnown RBP6.17□□□□□ -1.42
SMCHD1-209ENST00000583441 VAMP1P23763 118 aa6.17□□□□□ -1.42
SMCHD1-209ENST00000583441 TNNI2P48788 182 aa6.17□□□□□ -1.42
SMCHD1-209ENST00000583441 HTRA3P83110 453 aa6.17□□□□□ -1.42
SMCHD1-209ENST00000583441 NR1I3Q14994 352 aa6.17□□□□□ -1.42
SMCHD1-209ENST00000583441 ACSF2Q96CM8 615 aaPredicted RBP6.17□□□□□ -1.42
SMCHD1-209ENST00000583441 CDK5RAP1Q96SZ6 601 aaKnown RBP6.17□□□□□ -1.42
SMCHD1-209ENST00000583441 TNFRSF12AQ9NP84 129 aa6.17□□□□□ -1.42
SMCHD1-209ENST00000583441 TMEM82A0PJX8 343 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 FKTNO75072 461 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 LDHBP07195 334 aaKnown RBP6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 LMNB1P20700 586 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 MAPK8P45983 427 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 INHBEP58166 350 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 CDSNQ15517 529 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 ENOX2Q16206 610 aaKnown RBP6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 ALG1LQ6GMV1 187 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 GLB1LQ6UWU2 654 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 NUP43Q8NFH3 380 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 SYTL5Q8TDW5 730 aaPredicted RBP6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 FBF1Q8TES7 1133 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 MRRFQ96E11 262 aaKnown RBP6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 ASPNQ9BXN1 380 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 ADAM30Q9UKF2 790 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 TNFRSF18Q9Y5U5 241 aa6.16□□□□□ -1.42
SMCHD1-209ENST00000583441 FADS2P1A8MWK0 482 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms