RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 CLIC4Q9Y696 253 aa10.66□□□□□ -0.7
SS18-220ENST00000582092 MANSC4A6NHS7 340 aaPredicted RBP10.65□□□□□ -0.7
SS18-220ENST00000582092 BTBD18B2RXH4 712 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 KLRF2D3W0D1 207 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 RAD21O60216 631 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 NPM3O75607 178 aaKnown RBP10.65□□□□□ -0.7
SS18-220ENST00000582092 BMP15O95972 392 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 ALDH1A1P00352 501 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 ZBTB48P10074 688 aaPredicted RBP10.65□□□□□ -0.7
SS18-220ENST00000582092 ATP2B1P20020 1258 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 GUCY1A2P33402 732 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 CAMK4Q16566 473 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 CERKLQ49MI3 558 aaPredicted RBP10.65□□□□□ -0.7
SS18-220ENST00000582092 RCSD1Q6JBY9 416 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 SRBD1Q8N5C6 995 aaKnown RBP10.65□□□□□ -0.7
SS18-220ENST00000582092 LINC00301Q8NCQ3 95 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 MRPS27Q92552 414 aaKnown RBP10.65□□□□□ -0.7
SS18-220ENST00000582092 CCDC34Q96HJ3 373 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 CSRNP1Q96S65 589 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 SDF4Q9BRK5 362 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 IDI2Q9BXS1 227 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 EHD4Q9H223 541 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 DDX4Q9NQI0 724 aaKnown RBP10.65□□□□□ -0.7
SS18-220ENST00000582092 SH3GLB2Q9NR46 395 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 VPS54Q9P1Q0 977 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.65□□□□□ -0.7
SS18-220ENST00000582092 CLIP2Q9UDT6 1046 aa10.65□□□□□ -0.7
SS18-220ENST00000582092 A0A1W2PQ27 194 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 A0A1W2PQ64 194 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 A0A1W2PQD8 194 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 hCG_1642624A0A1W2PR95 340 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 KIF28PB7ZC32 967 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 USP2O75604 605 aaPredicted RBP10.64□□□□□ -0.71
SS18-220ENST00000582092 TRPA1O75762 1119 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 XRCC6P12956 609 aaKnown RBP eCLIP10.64□□□□□ -0.71
SS18-220ENST00000582092 LIG1P18858 919 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 CACNB3P54284 484 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 MAP3K9P80192 1104 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 SLC39A14Q15043 492 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 PFKFB3Q16875 520 aaPredicted RBP10.64□□□□□ -0.71
SS18-220ENST00000582092 CCDC96Q2M329 555 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 ASPRV1Q53RT3 343 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 SPRYD7Q5W111 196 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 GALNT17Q6IS24 598 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 FAM151AQ8WW52 585 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 TRIM44Q96DX7 344 aaPredicted RBP10.64□□□□□ -0.71
SS18-220ENST00000582092 CEP95Q96GE4 821 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 PGBD1Q96JS3 809 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 TMEM39BQ9GZU3 492 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 CLSTN2Q9H4D0 955 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 VAT1LQ9HCJ6 419 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 MTMR4Q9NYA4 1195 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 FAM13BQ9NYF5 915 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 HOOK1Q9UJC3 728 aaKnown RBP10.64□□□□□ -0.71
SS18-220ENST00000582092 PCDHA7Q9UN72 937 aa10.64□□□□□ -0.71
SS18-220ENST00000582092 CCDC194A0A1B0GVG4 234 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 TRIM75PA6NK02 468 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 CUTAO60888 179 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 PPP6R2O75170 966 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 AKR1B1P15121 316 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 SMARCA1P28370 1054 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 MARCKSP29966 332 aaPredicted RBP10.63□□□□□ -0.71
SS18-220ENST00000582092 TM4SF4P48230 202 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 FAM160A1Q05DH4 1040 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 MKRN3Q13064 507 aaKnown RBP10.63□□□□□ -0.71
SS18-220ENST00000582092 HEATR3Q7Z4Q2 680 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 GAS2L3Q86XJ1 694 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 FAM177A1Q8N128 213 aaPredicted RBP10.63□□□□□ -0.71
SS18-220ENST00000582092 WNK4Q96J92 1243 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 TEPSINQ96N21 525 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 ZIC5Q96T25 663 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 PHF20Q9BVI0 1012 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 ZNF341Q9BYN7 854 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 FTOQ9C0B1 505 aaKnown RBP eCLIP10.63□□□□□ -0.71
SS18-220ENST00000582092 KANSL2Q9H9L4 492 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 C6orf50Q9HD87 102 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 RNF186Q9NXI6 227 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 MAD2L2Q9UI95 211 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 OTOFQ9HC10 1997 aa10.63□□□□□ -0.71
SS18-220ENST00000582092 CNTNAP5Q8WYK1 1306 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 NR1I2O75469 434 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 GOLGA8HP0CJ92 632 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 CMA1P23946 247 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 GNA11P29992 359 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 NAPAP54920 295 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 GABPAQ06546 454 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 FUT2Q10981 343 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 NFIAQ12857 509 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 PKN1Q16512 942 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 ABCB5Q2M3G0 1257 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 UVSSAQ2YD98 709 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 GPATCH4Q5T3I0 446 aaKnown RBP10.62□□□□□ -0.71
SS18-220ENST00000582092 KRI1Q8N9T8 703 aaKnown RBP10.62□□□□□ -0.71
SS18-220ENST00000582092 SPZ1Q9BXG8 430 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.62□□□□□ -0.71
SS18-220ENST00000582092 GPCPD1Q9NPB8 672 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 HERC5Q9UII4 1024 aaKnown RBP10.62□□□□□ -0.71
SS18-220ENST00000582092 TSKSQ9UJT2 592 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 MYH6P13533 1939 aa10.62□□□□□ -0.71
SS18-220ENST00000582092 SSC5DA1L4H1 1573 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms