RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SLC38A10Q9HBR0 1119 aa17.24■□□□□ 0.35
SMARCE1-216ENST00000580419 CLIP2Q9UDT6 1046 aa17.24■□□□□ 0.35
SMARCE1-216ENST00000580419 FBXO40Q9UH90 709 aa17.24■□□□□ 0.35
SMARCE1-216ENST00000580419 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.24■□□□□ 0.35
SMARCE1-216ENST00000580419 DNAJC25-GNG10A0A024R161 153 aa17.23■□□□□ 0.35
SMARCE1-216ENST00000580419 ORC4O43929 436 aa17.23■□□□□ 0.35
SMARCE1-216ENST00000580419 TINF2Q9BSI4 451 aa17.23■□□□□ 0.35
SMARCE1-216ENST00000580419 OSBPL3Q9H4L5 887 aa17.23■□□□□ 0.35
SMARCE1-216ENST00000580419 SYNGAP1Q96PV0 1343 aa17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 FOXP2O15409 715 aa17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 ZBED4O75132 1171 aa17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 TSPY3P0CV98 308 aa17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 TSPY8P0CW00 308 aa17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 SNX17Q15036 470 aa17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 LRIT3Q3SXY7 679 aa17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 C7orf61Q8IZ16 206 aa17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 CHST13Q8NET6 341 aa17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 SEC62Q99442 399 aaKnown RBP17.22■□□□□ 0.35
SMARCE1-216ENST00000580419 LAMA2P24043 3122 aaKnown RBP17.21■□□□□ 0.35
SMARCE1-216ENST00000580419 CNGA1P29973 690 aa17.21■□□□□ 0.35
SMARCE1-216ENST00000580419 LRRC26Q2I0M4 334 aa17.21■□□□□ 0.35
SMARCE1-216ENST00000580419 RCSD1Q6JBY9 416 aa17.21■□□□□ 0.35
SMARCE1-216ENST00000580419 FAM160B2Q86V87 743 aa17.21■□□□□ 0.35
SMARCE1-216ENST00000580419 CHURC1Q8WUH1 139 aa17.21■□□□□ 0.35
SMARCE1-216ENST00000580419 RWDD1Q9H446 243 aaPredicted RBP17.21■□□□□ 0.35
SMARCE1-216ENST00000580419 KBTBD13C9JR72 458 aa17.2■□□□□ 0.34
SMARCE1-216ENST00000580419 BMP3P12645 472 aa17.2■□□□□ 0.34
SMARCE1-216ENST00000580419 TFAP4Q01664 338 aa17.2■□□□□ 0.34
SMARCE1-216ENST00000580419 TKFCQ3LXA3 575 aa17.2■□□□□ 0.34
SMARCE1-216ENST00000580419 MCMDC2Q4G0Z9 681 aa17.2■□□□□ 0.34
SMARCE1-216ENST00000580419 TCP11L1Q9NUJ3 509 aa17.2■□□□□ 0.34
SMARCE1-216ENST00000580419 PRDM1O75626 825 aa17.19■□□□□ 0.34
SMARCE1-216ENST00000580419 STAT2P52630 851 aa17.19■□□□□ 0.34
SMARCE1-216ENST00000580419 MFAP1P55081 439 aaKnown RBP17.19■□□□□ 0.34
SMARCE1-216ENST00000580419 SLFN13Q68D06 897 aa17.19■□□□□ 0.34
SMARCE1-216ENST00000580419 SNRNP48Q6IEG0 339 aaKnown RBP17.19■□□□□ 0.34
SMARCE1-216ENST00000580419 RARBP10826 455 aa17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 AKR1A1P14550 325 aa17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 MAGEA10P43363 369 aaPredicted RBP17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 TDHQ8IZJ6 230 aa17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 STAG1Q8WVM7 1258 aa17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 NUP88Q99567 741 aaPredicted RBP17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 TSEN34Q9BSV6 310 aaKnown RBP17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 SENP6Q9GZR1 1112 aaPredicted RBP17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 PNMA2Q9UL42 364 aa17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 PHF24Q9UPV7 400 aa17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 CNPY2Q9Y2B0 182 aa17.18■□□□□ 0.34
SMARCE1-216ENST00000580419 TSPY2A6NKD2 308 aa17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 ZNF865P0CJ78 1059 aaPredicted RBP17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 NKX3-2P78367 333 aa17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 LRRC41Q15345 812 aa17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 SLC39A5Q6ZMH5 540 aa17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 RNF180Q86T96 592 aa17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 DDX11Q96FC9 970 aa17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 IL17RBQ9NRM6 502 aa17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 CTDP1Q9Y5B0 961 aaPredicted RBP17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 MCM3APO60318 1980 aa17.17■□□□□ 0.34
SMARCE1-216ENST00000580419 COL6A3P12111 3177 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 LOC102724159A0A0B4J2E5 919 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 RAD21O60216 631 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 FGAP02671 866 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 PGK2P07205 417 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 SLC1A4P43007 532 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 NUCB1Q02818 461 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 PWP2Q15269 919 aaKnown RBP17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 TTC14Q96N46 770 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 MAF1Q9H063 256 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 ABHD16BQ9H3Z7 469 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 ZMYND8Q9ULU4 1186 aaPredicted RBP17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 RIPK3Q9Y572 518 aa17.16■□□□□ 0.34
SMARCE1-216ENST00000580419 HSPD1P10809 573 aaKnown RBP17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 CST5P28325 142 aaPredicted RBP17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 FAM47AQ5JRC9 791 aa17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 BTNL9Q6UXG8 535 aa17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 CHD1LQ86WJ1 897 aa17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 LRRC47Q8N1G4 583 aaKnown RBP17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 DCAF4Q8WV16 495 aa17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 KIFC2Q96AC6 838 aa17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 XPNPEP3Q9NQH7 507 aa17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 FAM184BQ9ULE4 1060 aa17.15■□□□□ 0.34
SMARCE1-216ENST00000580419 LTBP2Q14767 1821 aa17.14■□□□□ 0.34
SMARCE1-216ENST00000580419 MOXD2PA6NHM9 499 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 TMEM232C9JQI7 657 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 HIP1O00291 1037 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 ADAMTS4O75173 837 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 DUSP11O75319 330 aaKnown RBP17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 RTP1P59025 263 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 PRAMEF19Q5SWL8 479 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 GJC2Q5T442 439 aaPredicted RBP17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 VPS53Q5VIR6 699 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 STK11IPQ8N1F8 1099 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 FAM133AQ8N9E0 248 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 TOX2Q96NM4 488 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 UBE2OQ9C0C9 1292 aaKnown RBP17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 ACAD9Q9H845 621 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 STX8Q9UNK0 236 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 ZNF536O15090 1300 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 CCDC171Q6TFL3 1326 aa17.14■□□□□ 0.33
SMARCE1-216ENST00000580419 A0A0D9SFI3 127 aa17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 SNAI1O95863 264 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms