RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 IGHA2P01877 340 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 FCER1AP12319 257 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 CHMLP26374 656 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 SLC1A4P43007 532 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 CACNB2Q08289 660 aaPredicted RBP17.52■□□□□ 0.4
SS18-212ENST00000579061 IMMTQ16891 758 aaKnown RBP17.52■□□□□ 0.4
SS18-212ENST00000579061 MFSD14CQ5VZR4 134 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 OLFML2BQ68BL8 750 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 CENPQQ7L2Z9 268 aaPredicted RBP17.52■□□□□ 0.4
SS18-212ENST00000579061 UBE2Q1Q7Z7E8 422 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 NPLOC4Q8TAT6 608 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 ESR2Q92731 530 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 TTC14Q96N46 770 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 TEX13BQ9BXU2 312 aa17.52■□□□□ 0.4
SS18-212ENST00000579061 TMEM232C9JQI7 657 aa17.51■□□□□ 0.39
SS18-212ENST00000579061 TFRCP02786 760 aaKnown RBP17.51■□□□□ 0.39
SS18-212ENST00000579061 TOP1P11387 765 aaKnown RBP17.51■□□□□ 0.39
SS18-212ENST00000579061 STAT2P52630 851 aa17.51■□□□□ 0.39
SS18-212ENST00000579061 OAZ1P54368 228 aa17.51■□□□□ 0.39
SS18-212ENST00000579061 PRPF38BQ5VTL8 546 aaKnown RBP17.51■□□□□ 0.39
SS18-212ENST00000579061 RCSD1Q6JBY9 416 aa17.51■□□□□ 0.39
SS18-212ENST00000579061 ANKLE1Q8NAG6 615 aa17.51■□□□□ 0.39
SS18-212ENST00000579061 KIFC2Q96AC6 838 aa17.51■□□□□ 0.39
SS18-212ENST00000579061 SLC38A10Q9HBR0 1119 aa17.51■□□□□ 0.39
SS18-212ENST00000579061 FLRT1Q9NZU1 646 aa17.51■□□□□ 0.39
SS18-212ENST00000579061 PLXNA1Q9UIW2 1896 aa17.51■□□□□ 0.39
SS18-212ENST00000579061 CTDP1Q9Y5B0 961 aaPredicted RBP17.51■□□□□ 0.39
SS18-212ENST00000579061 COBLO75128 1261 aa17.5■□□□□ 0.39
SS18-212ENST00000579061 MCCP23508 829 aa17.5■□□□□ 0.39
SS18-212ENST00000579061 CCDC178Q5BJE1 867 aa17.5■□□□□ 0.39
SS18-212ENST00000579061 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.5■□□□□ 0.39
SS18-212ENST00000579061 DCAF4Q8WV16 495 aa17.5■□□□□ 0.39
SS18-212ENST00000579061 IL25Q9H293 177 aa17.5■□□□□ 0.39
SS18-212ENST00000579061 NEDD4P46934 1319 aa17.49■□□□□ 0.39
SS18-212ENST00000579061 FARP2O94887 1054 aaPredicted RBP17.49■□□□□ 0.39
SS18-212ENST00000579061 KCTD2Q14681 263 aa17.49■□□□□ 0.39
SS18-212ENST00000579061 SNRNP48Q6IEG0 339 aaKnown RBP17.49■□□□□ 0.39
SS18-212ENST00000579061 MMP19Q99542 508 aa17.49■□□□□ 0.39
SS18-212ENST00000579061 TMEM47Q9BQJ4 181 aa17.49■□□□□ 0.39
SS18-212ENST00000579061 OGDHLQ9ULD0 1010 aa17.49■□□□□ 0.39
SS18-212ENST00000579061 DIS3Q9Y2L1 958 aaKnown RBP17.49■□□□□ 0.39
SS18-212ENST00000579061 DGKHQ86XP1 1220 aa17.48■□□□□ 0.39
SS18-212ENST00000579061 KRT23Q9C075 422 aa17.48■□□□□ 0.39
SS18-212ENST00000579061 CNNM2Q9H8M5 875 aa17.48■□□□□ 0.39
SS18-212ENST00000579061 FBXO40Q9UH90 709 aa17.48■□□□□ 0.39
SS18-212ENST00000579061 FRMPD3Q5JV73 1810 aa17.48■□□□□ 0.39
SS18-212ENST00000579061 SGSM2O43147 1006 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 MSCO60682 206 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 CCND3P30281 292 aaPredicted RBP17.47■□□□□ 0.39
SS18-212ENST00000579061 IKQ13123 557 aaPredicted RBP17.47■□□□□ 0.39
SS18-212ENST00000579061 BTNL9Q6UXG8 535 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 KCTD1Q719H9 257 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 IQCA1Q86XH1 822 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 CPXCR1Q8N123 301 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 CHST13Q8NET6 341 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 MAML3Q96JK9 1138 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 HTATIP2Q9BUP3 242 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 RAVER2Q9HCJ3 691 aaKnown RBP17.47■□□□□ 0.39
SS18-212ENST00000579061 ISY1Q9ULR0 285 aaKnown RBP17.47■□□□□ 0.39
SS18-212ENST00000579061 RIPK3Q9Y572 518 aa17.47■□□□□ 0.39
SS18-212ENST00000579061 KDM4AO75164 1064 aa17.46■□□□□ 0.39
SS18-212ENST00000579061 CYBAP13498 195 aa17.46■□□□□ 0.39
SS18-212ENST00000579061 CYP2C19P33261 490 aa17.46■□□□□ 0.39
SS18-212ENST00000579061 ZNF792Q3KQV3 632 aa17.46■□□□□ 0.39
SS18-212ENST00000579061 ANKS1AQ92625 1134 aa17.46■□□□□ 0.39
SS18-212ENST00000579061 NRBP1Q9UHY1 535 aa17.46■□□□□ 0.39
SS18-212ENST00000579061 B4E1Z4 1266 aa17.45■□□□□ 0.38
SS18-212ENST00000579061 SNHG28P0DPA3 235 aa17.45■□□□□ 0.38
SS18-212ENST00000579061 CCDC96Q2M329 555 aa17.45■□□□□ 0.38
SS18-212ENST00000579061 TKFCQ3LXA3 575 aa17.45■□□□□ 0.38
SS18-212ENST00000579061 LHX8Q68G74 356 aa17.45■□□□□ 0.38
SS18-212ENST00000579061 NECAB2Q7Z6G3 386 aa17.45■□□□□ 0.38
SS18-212ENST00000579061 ZSWIM5Q9P217 1185 aa17.45■□□□□ 0.38
SS18-212ENST00000579061 PRR12Q9ULL5 1215 aa17.45■□□□□ 0.38
SS18-212ENST00000579061 U3KPZ7 1027 aaPredicted RBP17.45■□□□□ 0.38
SS18-212ENST00000579061 SMCHD1A6NHR9 2005 aa17.44■□□□□ 0.38
SS18-212ENST00000579061 DNAJC25-GNG10A0A024R161 153 aa17.44■□□□□ 0.38
SS18-212ENST00000579061 PGK2P07205 417 aa17.44■□□□□ 0.38
SS18-212ENST00000579061 PDHBP11177 359 aa17.44■□□□□ 0.38
SS18-212ENST00000579061 PTH1RQ03431 593 aa17.44■□□□□ 0.38
SS18-212ENST00000579061 BMP2KLQ5H9B9 411 aa17.44■□□□□ 0.38
SS18-212ENST00000579061 MSL3Q8N5Y2 521 aaKnown RBP17.44■□□□□ 0.38
SS18-212ENST00000579061 DDX11Q96FC9 970 aa17.44■□□□□ 0.38
SS18-212ENST00000579061 PAWRQ96IZ0 340 aaKnown RBP17.44■□□□□ 0.38
SS18-212ENST00000579061 DDX20Q9UHI6 824 aaKnown RBP17.44■□□□□ 0.38
SS18-212ENST00000579061 MTMR7Q9Y216 660 aa17.44■□□□□ 0.38
SS18-212ENST00000579061 ZNF536O15090 1300 aa17.44■□□□□ 0.38
SS18-212ENST00000579061 MNX1P50219 401 aaPredicted RBP17.43■□□□□ 0.38
SS18-212ENST00000579061 ZNF543Q08ER8 600 aa17.43■□□□□ 0.38
SS18-212ENST00000579061 GPATCH4Q5T3I0 446 aaKnown RBP17.43■□□□□ 0.38
SS18-212ENST00000579061 RASGRP2Q7LDG7 609 aa17.43■□□□□ 0.38
SS18-212ENST00000579061 ZNF467Q7Z7K2 595 aaPredicted RBP17.43■□□□□ 0.38
SS18-212ENST00000579061 TRPV1Q8NER1 839 aa17.43■□□□□ 0.38
SS18-212ENST00000579061 MAP4K1Q92918 833 aa17.43■□□□□ 0.38
SS18-212ENST00000579061 ZSCAN10Q96SZ4 725 aaPredicted RBP17.43■□□□□ 0.38
SS18-212ENST00000579061 ZKSCAN3Q9BRR0 538 aa17.43■□□□□ 0.38
SS18-212ENST00000579061 TINF2Q9BSI4 451 aa17.43■□□□□ 0.38
SS18-212ENST00000579061 ACAD9Q9H845 621 aa17.43■□□□□ 0.38
SS18-212ENST00000579061 SEPT4O43236 478 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 CYP21A2P08686 494 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms