RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 EPB42P16452 691 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 HYIQ5T013 277 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 PDXDC1Q6P996 788 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 ETFBKMTQ8IXQ9 262 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 C16orf71Q8IYS4 520 aaPredicted RBP8.18□□□□□ -1.1
VPS53-217ENST00000575100 PJA1Q8NG27 643 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 ATXN2LQ8WWM7 1075 aaKnown RBP8.18□□□□□ -1.1
VPS53-217ENST00000575100 ARHGAP45Q92619 1136 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 TMEM74Q96NL1 305 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 SELENOOQ9BVL4 669 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 SARGQ9BW04 601 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 DDX21Q9NR30 783 aaKnown RBP eCLIP8.18□□□□□ -1.1
VPS53-217ENST00000575100 ACTR10Q9NZ32 417 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 RNF181Q9P0P0 153 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 USP25Q9UHP3 1055 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 AKAP2Q9Y2D5 859 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 PCDHB11Q9Y5F2 797 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 COL11A2P13942 1736 aaPredicted RBP8.17□□□□□ -1.1
VPS53-217ENST00000575100 MINDY4BA8MYZ0 360 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 RFPL1O75677 317 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 CYP19A1P11511 503 aaPredicted RBP8.17□□□□□ -1.1
VPS53-217ENST00000575100 RRM1P23921 792 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 CHRNA5P30532 468 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 BCAMP50895 628 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 AIMP1Q12904 312 aaKnown RBP8.17□□□□□ -1.1
VPS53-217ENST00000575100 SEPT6Q14141 434 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 SLC4A8Q2Y0W8 1093 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 PPHLN1Q8NEY8 458 aaKnown RBP8.17□□□□□ -1.1
VPS53-217ENST00000575100 CCDC74AQ96AQ1 378 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 HERPUD2Q9BSE4 406 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 LRRC27Q9C0I9 530 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 OBP2AQ9NY56 170 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 PFDN2Q9UHV9 154 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 PTPRCP08575 1304 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 IPO8O15397 1037 aaKnown RBP8.17□□□□□ -1.1
VPS53-217ENST00000575100 GREM1O60565 184 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 TNFRSF21O75509 655 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 GPSM2P81274 684 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 PICALMQ13492 652 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 MVPQ14764 893 aaKnown RBP8.17□□□□□ -1.1
VPS53-217ENST00000575100 WWC2Q6AWC2 1192 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 ASTLQ6HA08 431 aaPredicted RBP8.17□□□□□ -1.1
VPS53-217ENST00000575100 CCDC81Q6ZN84 652 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 NECAB2Q7Z6G3 386 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 STK11IPQ8N1F8 1099 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 SKA1Q96BD8 255 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 STRBPQ96SI9 672 aaKnown RBP8.17□□□□□ -1.1
VPS53-217ENST00000575100 TSPAN18Q96SJ8 248 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 NARFQ9UHQ1 456 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 FBXO2Q9UK22 296 aaPredicted RBP8.17□□□□□ -1.1
VPS53-217ENST00000575100 ZBTB1Q9Y2K1 713 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 RABGAP1Q9Y3P9 1069 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 COL15A1P39059 1388 aa8.17□□□□□ -1.1
VPS53-217ENST00000575100 BCORQ6W2J9 1755 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 PI4KAP2A4QPH2 592 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 PPP1R12BO60237 982 aaPredicted RBP8.16□□□□□ -1.1
VPS53-217ENST00000575100 ZPR1O75312 459 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 JUNDP17535 347 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 HALP42357 657 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 PPM1FP49593 454 aaPredicted RBP8.16□□□□□ -1.1
VPS53-217ENST00000575100 SCNN1DP51172 638 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 MAP3K10Q02779 954 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 GRIN2CQ14957 1233 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 BLOC1S3Q6QNY0 202 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 TTLL7Q6ZT98 887 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 COPS6Q7L5N1 327 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 ITPRIPQ8IWB1 547 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 PI4KAP1Q8N8J0 262 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 SMC1BQ8NDV3 1235 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 RIN3Q8TB24 985 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 XAGE3Q8WTP9 111 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 CHMP4CQ96CF2 233 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 SMAD5Q99717 465 aaKnown RBP8.16□□□□□ -1.1
VPS53-217ENST00000575100 RRAGCQ9HB90 399 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 EVA1BQ9NVM1 165 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 UBP1Q9NZI7 540 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 MAPRE3Q9UPY8 281 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 IPPQ9Y573 584 aa8.16□□□□□ -1.1
VPS53-217ENST00000575100 RASSF10A6NK89 507 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 NBPF7P0C2Y1 421 aaPredicted RBP8.15□□□□□ -1.1
VPS53-217ENST00000575100 SERPINB3P29508 390 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 GBP2P32456 591 aaPredicted RBP8.15□□□□□ -1.1
VPS53-217ENST00000575100 ZAP70P43403 619 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 NFIXQ14938 502 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 SETDB1Q15047 1291 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 TMEM67Q5HYA8 995 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 RELL1Q8IUW5 271 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 PASD1Q8IV76 773 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 ZSWIM2Q8NEG5 633 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 MPP4Q96JB8 637 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 GPR101Q96P66 508 aaPredicted RBP8.15□□□□□ -1.1
VPS53-217ENST00000575100 SERINC2Q96SA4 455 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 API5Q9BZZ5 524 aaKnown RBP8.15□□□□□ -1.1
VPS53-217ENST00000575100 HYPKQ9NX55 129 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 C9orf78Q9NZ63 289 aaPredicted RBP8.15□□□□□ -1.1
VPS53-217ENST00000575100 PUF60Q9UHX1 559 aaKnown RBP8.15□□□□□ -1.1
VPS53-217ENST00000575100 ZMYM5Q9UJ78 669 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 ZNF180Q9UJW8 692 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 PPT2Q9UMR5 302 aa8.15□□□□□ -1.1
VPS53-217ENST00000575100 VSTM5A8MXK1 200 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms