RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	PDCL3	Q9H2J4	239 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	POTEB2	H3BUK9	544 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	FGFR1OP	O95684	399 aa	Known RBP	11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	ZNF165	P49910	485 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	STX1A	Q16623	288 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	CNKSR2	Q8WXI2	1034 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	USP28	Q96RU2	1077 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	TAF6L	Q9Y6J9	622 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	CUTA	O60888	179 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	PDE4D	Q08499	809 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	NR5A1	Q13285	461 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	MTMR2	Q13614	643 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	SGMS1	Q86VZ5	419 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	PRPF38A	Q8NAV1	312 aa	Known RBP	11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	CBFA2T2	O43439	604 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	FAM13A	O94988	1023 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	CELF2	O95319	508 aa	Known RBP	11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	HUNK	P57058	714 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	PDE4C	Q08493	712 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	TCERG1L	Q5VWI1	586 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	PLA2G4D	Q86XP0	818 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	PGBD1	Q96JS3	809 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	TCHP	Q9BT92	498 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	AZI2	Q9H6S1	392 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	KCNH3	Q9ULD8	1083 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	PCDHA4	Q9UN74	947 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	RGPD1	P0DJD0	1748 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	YEATS4	O95619	227 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	VIL1	P09327	827 aa	Known RBP	11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	CNGA1	P29973	690 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	SYCP1	Q15431	976 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	GRIK5	Q16478	980 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	MAP1S	Q66K74	1059 aa	Predicted RBP	11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	FERMT2	Q96AC1	680 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	MLXIP	Q9HAP2	919 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	ZNHIT6	Q9NWK9	470 aa	Known RBP	11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	FEM1B	Q9UK73	627 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	PCDHA12	Q9UN75	941 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	DDTL	A6NHG4	134 aa	Predicted RBP	11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	hCG_1984214	I3L0E3	225 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	ZBTB5	O15062	677 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	NAP1L1	P55209	391 aa	Known RBP	11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	EXOSC10	Q01780	885 aa	Known RBP	11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	SV2B	Q7L1I2	683 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	CERS5	Q8N5B7	392 aa		11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	ZNF713	Q8N859	430 aa	Predicted RBP	11.4	□□□□□ -0.58
SMG6-213	ENST00000573166	LRRC37A3	O60309	1634 aa		11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	POLR2D	O15514	142 aa	Known RBP	11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	FAM160A1	Q05DH4	1040 aa		11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	FILIP1	Q7Z7B0	1213 aa		11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	ZNF280C	Q8ND82	737 aa		11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	RBM46	Q8TBY0	533 aa	Known RBP	11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	RAVER2	Q9HCJ3	691 aa	Known RBP	11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	RTEL1	Q9NZ71	1219 aa		11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	ADD3	Q9UEY8	706 aa	Known RBP	11.4	□□□□□ -0.59
SMG6-213	ENST00000573166	TCRBV5S4A2T	A0A5A2	114 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	HOXA13	P31271	388 aa	Predicted RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	ZNF157	P51786	506 aa	Predicted RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	CCDC40	Q4G0X9	1142 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	APOBEC3H	Q6NTF7	200 aa	Known RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	ANKRD13A	Q8IZ07	590 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	GLG1	Q92896	1179 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	FAM163A	Q96GL9	167 aa	Predicted RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	TRIM47	Q96LD4	638 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	FOXP1	Q9H334	677 aa	Predicted RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	RRAGC	Q9HB90	399 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	NYAP2	Q9P242	653 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	SORBS3	O60504	671 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	DKC1	O60832	514 aa	Known RBP eCLIP	11.39	□□□□□ -0.59	3e-6	■■■■■ 27.9
SMG6-213	ENST00000573166	ELP1	O95163	1332 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	NDUFB10	O96000	172 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	CDC27	P30260	824 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	GRM4	Q14833	912 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	UBE2S	Q16763	222 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	GJB4	Q9NTQ9	266 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	DDX25	Q9UHL0	483 aa	Known RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	NOD1	Q9Y239	953 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	ARHGEF35	A5YM69	484 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	UBE2Q2L	H0YL09	131 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	MTIF2	P46199	727 aa	Known RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	ARHGEF6	Q15052	776 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	FASTKD5	Q7L8L6	764 aa	Known RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	STAG2	Q8N3U4	1231 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	IGDCC4	Q8TDY8	1250 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	TBCK	Q8TEA7	893 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	ZKSCAN4	Q969J2	545 aa	Predicted RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	RPAP3	Q9H6T3	665 aa	Predicted RBP	11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	SPC25	Q9HBM1	224 aa		11.39	□□□□□ -0.59
SMG6-213	ENST00000573166	PLCH1	Q4KWH8	1693 aa		11.38	□□□□□ -0.59
SMG6-213	ENST00000573166	CTNND1	O60716	968 aa	Known RBP	11.38	□□□□□ -0.59
SMG6-213	ENST00000573166	MMP1	P03956	469 aa		11.38	□□□□□ -0.59
SMG6-213	ENST00000573166	RCAN1	P53805	252 aa		11.38	□□□□□ -0.59
SMG6-213	ENST00000573166	PTGDR	Q13258	359 aa		11.38	□□□□□ -0.59
SMG6-213	ENST00000573166	SNRNP48	Q6IEG0	339 aa	Known RBP	11.38	□□□□□ -0.59
SMG6-213	ENST00000573166	DOT1L	Q8TEK3	1739 aa		11.38	□□□□□ -0.59
SMG6-213	ENST00000573166	AK9	Q5TCS8	1911 aa		11.38	□□□□□ -0.59
SMG6-213	ENST00000573166	SCN11A	Q9UI33	1791 aa		11.38	□□□□□ -0.59
SMG6-213	ENST00000573166	PSMA7	O14818	248 aa		11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms