RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 LCORLQ8N3X6 602 aa8.96□□□□□ -0.98
NUP88-205ENST00000572809 SDR42E1Q8WUS8 393 aa8.96□□□□□ -0.98
NUP88-205ENST00000572809 GPATCH3Q96I76 525 aa8.96□□□□□ -0.98
NUP88-205ENST00000572809 EHD4Q9H223 541 aa8.96□□□□□ -0.98
NUP88-205ENST00000572809 ARMT1Q9H993 441 aa8.96□□□□□ -0.98
NUP88-205ENST00000572809 MCM9Q9NXL9 1143 aa8.96□□□□□ -0.98
NUP88-205ENST00000572809 ADGRA2Q96PE1 1338 aa8.96□□□□□ -0.98
NUP88-205ENST00000572809 DOCK1Q14185 1865 aa8.96□□□□□ -0.98
NUP88-205ENST00000572809 USP17L10C9JJH3 530 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 PRKAB2O43741 272 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 GH2P01242 217 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 CTGFP29279 349 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 SHROOM1Q2M3G4 852 aaPredicted RBP8.95□□□□□ -0.98
NUP88-205ENST00000572809 SMCR8Q8TEV9 937 aaPredicted RBP8.95□□□□□ -0.98
NUP88-205ENST00000572809 MRGPRX2Q96LB1 330 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 CABP5Q9NP86 173 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 DCP1AQ9NPI6 582 aaPredicted RBP8.95□□□□□ -0.98
NUP88-205ENST00000572809 ATP8A2Q9NTI2 1148 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 TMOD4Q9NZQ9 345 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 ZBTB21Q9ULJ3 1066 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 PTCH2Q9Y6C5 1203 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 CDK5RAP2Q96SN8 1893 aa8.95□□□□□ -0.98
NUP88-205ENST00000572809 FOCADQ5VW36 1801 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 PHIPQ8WWQ0 1821 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 MBD4O95243 580 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 CHGBP05060 677 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 HOXA7P31268 230 aaPredicted RBP8.94□□□□□ -0.98
NUP88-205ENST00000572809 FCGRTP55899 365 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 MTMR2Q13614 643 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 AAMPQ13685 434 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 RAB3GAP1Q15042 981 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 ABCB5Q2M3G0 1257 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 SLC9C1Q4G0N8 1177 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 ANKRD45Q5TZF3 282 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 BRICD5Q6PL45 260 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 KBTBD3Q8NAB2 608 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 ARMC5Q96C12 935 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 PUS7LQ9H0K6 701 aaKnown RBP8.94□□□□□ -0.98
NUP88-205ENST00000572809 ASCC2Q9H1I8 757 aaPredicted RBP8.94□□□□□ -0.98
NUP88-205ENST00000572809 SRRDQ9UH36 339 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 SIPA1L1O43166 1804 aa8.94□□□□□ -0.98
NUP88-205ENST00000572809 MYH1P12882 1939 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 FAM181BA6NEQ2 426 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 USP17L12C9JPN9 530 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 USP17L21D6R901 530 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 ERC2O15083 957 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 RNF113AO15541 343 aaKnown RBP8.93□□□□□ -0.98
NUP88-205ENST00000572809 SHMT1P34896 483 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 GCLCP48506 637 aaPredicted RBP8.93□□□□□ -0.98
NUP88-205ENST00000572809 GABPAQ06546 454 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 TRIM32Q13049 653 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 TSHZ3Q63HK5 1081 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 USP17L2Q6R6M4 530 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 AMOTL1Q8IY63 956 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 ANKRD13CQ8N6S4 541 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 RAET1EQ8TD07 263 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 HPS1Q92902 700 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 KIFC2Q96AC6 838 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 GCC1Q96CN9 775 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 P2RX7Q99572 595 aaKnown RBP8.93□□□□□ -0.98
NUP88-205ENST00000572809 SWAP70Q9UH65 585 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 SLC4A4Q9Y6R1 1079 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 TTC41PQ6P2S7 1318 aa8.93□□□□□ -0.98
NUP88-205ENST00000572809 ATAD5Q96QE3 1844 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 MYPNQ86TC9 1320 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 MPHOSPH10O00566 681 aaKnown RBP8.92□□□□□ -0.98
NUP88-205ENST00000572809 GLRX3O76003 335 aaKnown RBP8.92□□□□□ -0.98
NUP88-205ENST00000572809 ZFYP08048 801 aaPredicted RBP8.92□□□□□ -0.98
NUP88-205ENST00000572809 CYP2D6P10635 497 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 USP14P54578 494 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 IRX3P78415 501 aaPredicted RBP8.92□□□□□ -0.98
NUP88-205ENST00000572809 HDAC1Q13547 482 aaPredicted RBP8.92□□□□□ -0.98
NUP88-205ENST00000572809 FAM110CQ1W6H9 321 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 LRRFIP1Q32MZ4 808 aaKnown RBP8.92□□□□□ -0.98
NUP88-205ENST00000572809 C12orf60Q5U649 245 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 OTUD7AQ8TE49 926 aaPredicted RBP8.92□□□□□ -0.98
NUP88-205ENST00000572809 SH3TC2Q8TF17 1288 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 DYNLL2Q96FJ2 89 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 ZNF333Q96JL9 665 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 STRBPQ96SI9 672 aaKnown RBP8.92□□□□□ -0.98
NUP88-205ENST00000572809 PCDHGC3Q9UN70 934 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 GABRQQ9UN88 632 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 PTPRFP10586 1907 aa8.92□□□□□ -0.98
NUP88-205ENST00000572809 CYP2D7A0A087X1C5 515 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 TNPO2O14787 897 aaKnown RBP8.91□□□□□ -0.98
NUP88-205ENST00000572809 MYCP01106 439 aaPredicted RBP8.91□□□□□ -0.98
NUP88-205ENST00000572809 MX1P20591 662 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 GRK4P32298 578 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 GUCY1A2P33402 732 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 CDK8P49336 464 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 FLT3LGP49771 235 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 PRKCZQ05513 592 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 SEPT2Q15019 361 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 ZYXQ15942 572 aaKnown RBP8.91□□□□□ -0.98
NUP88-205ENST00000572809 MSS51Q4VC12 460 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 CTR9Q6PD62 1173 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 RNF19BQ6ZMZ0 732 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 CCDC82Q8N4S0 544 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 PI4K2BQ8TCG2 481 aa8.91□□□□□ -0.98
NUP88-205ENST00000572809 ACER1Q8TDN7 264 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms