RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 UMODL1Q5DID0 1318 aa15.93■□□□□ 0.14
CCDC40-208ENST00000572270 COPB2P35606 906 aa15.92■□□□□ 0.14
CCDC40-208ENST00000572270 CCDC184Q52MB2 194 aa15.92■□□□□ 0.14
CCDC40-208ENST00000572270 TTC39AQ5SRH9 613 aa15.92■□□□□ 0.14
CCDC40-208ENST00000572270 RIOX2Q8IUF8 465 aa15.92■□□□□ 0.14
CCDC40-208ENST00000572270 MYO5AQ9Y4I1 1855 aaKnown RBP15.91■□□□□ 0.14
CCDC40-208ENST00000572270 EPOPA6NHQ4 379 aa15.91■□□□□ 0.14
CCDC40-208ENST00000572270 IGSF3O75054 1194 aa15.91■□□□□ 0.14
CCDC40-208ENST00000572270 GJA9P57773 515 aa15.91■□□□□ 0.14
CCDC40-208ENST00000572270 SH2D4AQ9H788 454 aa15.91■□□□□ 0.14
CCDC40-208ENST00000572270 COL4A4P53420 1690 aaPredicted RBP15.91■□□□□ 0.14
CCDC40-208ENST00000572270 SRGAP3O43295 1099 aa15.9■□□□□ 0.14
CCDC40-208ENST00000572270 PFKMP08237 780 aa15.9■□□□□ 0.14
CCDC40-208ENST00000572270 CYP7A1P22680 504 aa15.9■□□□□ 0.14
CCDC40-208ENST00000572270 IRX5P78411 483 aaPredicted RBP15.9■□□□□ 0.14
CCDC40-208ENST00000572270 SPICE1Q8N0Z3 855 aa15.9■□□□□ 0.14
CCDC40-208ENST00000572270 UPF3AQ9H1J1 476 aaKnown RBP15.9■□□□□ 0.14
CCDC40-208ENST00000572270 ARHGEF10LQ9HCE6 1279 aa15.9■□□□□ 0.14
CCDC40-208ENST00000572270 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.9■□□□□ 0.14
CCDC40-208ENST00000572270 WDR46O15213 610 aaKnown RBP15.89■□□□□ 0.13
CCDC40-208ENST00000572270 SNAI1O95863 264 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-208ENST00000572270 CYP2E1P05181 493 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-208ENST00000572270 POLR3DP05423 398 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-208ENST00000572270 STAT3P40763 770 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 GRB10Q13322 594 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 ACVR2BQ13705 512 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 KIAA1755Q5JYT7 1200 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 CCDC158Q5M9N0 1113 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 FAM178BQ8IXR5 827 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 MIGA1Q8NAN2 632 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 SSH1Q8WYL5 1049 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 SLC9A7Q96T83 725 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 NOC4LQ9BVI4 516 aaKnown RBP15.89■□□□□ 0.13
CCDC40-208ENST00000572270 WNT8AQ9H1J5 351 aa15.89■□□□□ 0.13
CCDC40-208ENST00000572270 NAV1Q8NEY1 1877 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 KIF28PB7ZC32 967 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 CABYRO75952 493 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 ACTN1P12814 892 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 PLCD1P51178 756 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 TAP1Q03518 808 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 CCDC144BQ3MJ40 725 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 MAMDC4Q6UXC1 1216 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 TMEM179Q6ZVK1 233 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 DDX11Q96FC9 970 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 SCLYQ96I15 445 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 SEZ6LQ9BYH1 1024 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 ABHD16BQ9H3Z7 469 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 VCPKMTQ9H867 229 aa15.88■□□□□ 0.13
CCDC40-208ENST00000572270 DCXO43602 365 aa15.87■□□□□ 0.13
CCDC40-208ENST00000572270 ST18O60284 1047 aa15.87■□□□□ 0.13
CCDC40-208ENST00000572270 ITGA7Q13683 1181 aa15.87■□□□□ 0.13
CCDC40-208ENST00000572270 TTLL4Q14679 1199 aa15.87■□□□□ 0.13
CCDC40-208ENST00000572270 SLC43A3Q8NBI5 491 aa15.87■□□□□ 0.13
CCDC40-208ENST00000572270 UBE2ZQ9H832 354 aaPredicted RBP15.87■□□□□ 0.13
CCDC40-208ENST00000572270 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.87■□□□□ 0.13
CCDC40-208ENST00000572270 MYH8P13535 1937 aa15.87■□□□□ 0.13
CCDC40-208ENST00000572270 ZNF536O15090 1300 aa15.87■□□□□ 0.13
CCDC40-208ENST00000572270 ADCY6O43306 1168 aa15.86■□□□□ 0.13
CCDC40-208ENST00000572270 B4GALT4O60513 344 aa15.86■□□□□ 0.13
CCDC40-208ENST00000572270 ICA1Q05084 483 aa15.86■□□□□ 0.13
CCDC40-208ENST00000572270 ZNF467Q7Z7K2 595 aaPredicted RBP15.86■□□□□ 0.13
CCDC40-208ENST00000572270 PHOSPHO2Q8TCD6 241 aa15.86■□□□□ 0.13
CCDC40-208ENST00000572270 LMCD1Q9NZU5 365 aa15.86■□□□□ 0.13
CCDC40-208ENST00000572270 ADAMTS5Q9UNA0 930 aa15.86■□□□□ 0.13
CCDC40-208ENST00000572270 VWA5AO00534 786 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 IDH1O75874 414 aaKnown RBP15.85■□□□□ 0.13
CCDC40-208ENST00000572270 BEX3Q00994 111 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 FOXK2Q01167 660 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 GABPAQ06546 454 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 G3BP1Q13283 466 aaKnown RBP eCLIP15.85■□□□□ 0.13
CCDC40-208ENST00000572270 LEXMQ3ZCV2 418 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 CXCL17Q6UXB2 119 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 NOL8Q76FK4 1167 aaKnown RBP15.85■□□□□ 0.13
CCDC40-208ENST00000572270 DEFB128Q7Z7B8 93 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 MEIS3Q99687 375 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 TRPV6Q9H1D0 765 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 PIH1D3Q9NQM4 214 aaKnown RBP15.85■□□□□ 0.13
CCDC40-208ENST00000572270 ZNF214Q9UL59 606 aaPredicted RBP15.85■□□□□ 0.13
CCDC40-208ENST00000572270 TMX2Q9Y320 296 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 MCM3APO60318 1980 aa15.85■□□□□ 0.13
CCDC40-208ENST00000572270 ZEB2O60315 1214 aa15.84■□□□□ 0.13
CCDC40-208ENST00000572270 ZAP70P43403 619 aa15.84■□□□□ 0.13
CCDC40-208ENST00000572270 MAGEB6Q8N7X4 407 aa15.84■□□□□ 0.13
CCDC40-208ENST00000572270 AGBL1Q96MI9 1066 aa15.84■□□□□ 0.13
CCDC40-208ENST00000572270 FBXO28Q9NVF7 368 aa15.84■□□□□ 0.13
CCDC40-208ENST00000572270 PPP1R9AQ9ULJ8 1098 aa15.84■□□□□ 0.13
CCDC40-208ENST00000572270 LPXNO60711 386 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 ARHGEF15O94989 841 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 IL9P15248 144 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 KCNA5P22460 613 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 MTX1Q13505 466 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 SNRNP48Q6IEG0 339 aaKnown RBP15.83■□□□□ 0.12
CCDC40-208ENST00000572270 PTCRAQ6ISU1 281 aaPredicted RBP15.83■□□□□ 0.12
CCDC40-208ENST00000572270 HERC6Q8IVU3 1022 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 GDPD5Q8WTR4 605 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 MFSD14AQ96MC6 490 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 TEX13BQ9BXU2 312 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 MRS2Q9HD23 443 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 SMC4Q9NTJ3 1288 aa15.83■□□□□ 0.12
CCDC40-208ENST00000572270 USP34Q70CQ2 3546 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms