RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 IRX5P78411 483 aaPredicted RBP23.89■■□□□ 1.41
CCDC40-206ENST00000572083 KCNA10Q16322 511 aa23.89■■□□□ 1.41
CCDC40-206ENST00000572083 PANK1Q8TE04 598 aa23.89■■□□□ 1.41
CCDC40-206ENST00000572083 KIF1BPQ96EK5 621 aa23.89■■□□□ 1.41
CCDC40-206ENST00000572083 NUP88Q99567 741 aaPredicted RBP23.89■■□□□ 1.41
CCDC40-206ENST00000572083 TBX21Q9UL17 535 aa23.89■■□□□ 1.41
CCDC40-206ENST00000572083 MOXD2PA6NHM9 499 aa23.88■■□□□ 1.41
CCDC40-206ENST00000572083 SNAI1O95863 264 aaPredicted RBP23.88■■□□□ 1.41
CCDC40-206ENST00000572083 SNRNP48Q6IEG0 339 aaKnown RBP23.88■■□□□ 1.41
CCDC40-206ENST00000572083 KLHDC9Q8NEP7 349 aa23.88■■□□□ 1.41
CCDC40-206ENST00000572083 BOLA2Q9H3K6 86 aa23.88■■□□□ 1.41
CCDC40-206ENST00000572083 FAM184BQ9ULE4 1060 aa23.88■■□□□ 1.41
CCDC40-206ENST00000572083 SYNGAP1Q96PV0 1343 aa23.87■■□□□ 1.41
CCDC40-206ENST00000572083 CCSAPQ6IQ19 270 aaPredicted RBP23.87■■□□□ 1.41
CCDC40-206ENST00000572083 PPM1EQ8WY54 764 aa23.87■■□□□ 1.41
CCDC40-206ENST00000572083 SLF1Q9BQI6 1058 aa23.87■■□□□ 1.41
CCDC40-206ENST00000572083 TEX13BQ9BXU2 312 aa23.87■■□□□ 1.41
CCDC40-206ENST00000572083 SLC4A4Q9Y6R1 1079 aa23.87■■□□□ 1.41
CCDC40-206ENST00000572083 GREB1LQ9C091 1923 aaPredicted RBP23.86■■□□□ 1.41
CCDC40-206ENST00000572083 PBX2P40425 430 aa23.86■■□□□ 1.41
CCDC40-206ENST00000572083 SLC4A3P48751 1232 aa23.86■■□□□ 1.41
CCDC40-206ENST00000572083 MFSD5Q6N075 450 aa23.86■■□□□ 1.41
CCDC40-206ENST00000572083 CCDC129Q6ZRS4 1044 aa23.86■■□□□ 1.41
CCDC40-206ENST00000572083 MSL3Q8N5Y2 521 aaKnown RBP23.86■■□□□ 1.41
CCDC40-206ENST00000572083 DDX11Q96FC9 970 aa23.86■■□□□ 1.41
CCDC40-206ENST00000572083 DDRGK1Q96HY6 314 aa23.86■■□□□ 1.41
CCDC40-206ENST00000572083 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.86■■□□□ 1.41
CCDC40-206ENST00000572083 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.86■■□□□ 1.41
CCDC40-206ENST00000572083 RIPK3Q9Y572 518 aa23.86■■□□□ 1.41
CCDC40-206ENST00000572083 ZBED9Q6R2W3 1325 aa23.85■■□□□ 1.41
CCDC40-206ENST00000572083 MYH7P12883 1935 aa23.85■■□□□ 1.41
CCDC40-206ENST00000572083 GRXCR1A8MXD5 290 aa23.85■■□□□ 1.41
CCDC40-206ENST00000572083 ADCY6O43306 1168 aa23.85■■□□□ 1.41
CCDC40-206ENST00000572083 C6orf222P0C671 652 aaPredicted RBP23.85■■□□□ 1.41
CCDC40-206ENST00000572083 TMEM240Q5SV17 173 aa23.85■■□□□ 1.41
CCDC40-206ENST00000572083 CTR9Q6PD62 1173 aa23.85■■□□□ 1.41
CCDC40-206ENST00000572083 C16orf59Q7L2K0 433 aa23.85■■□□□ 1.41
CCDC40-206ENST00000572083 GLT1D1Q96MS3 346 aa23.85■■□□□ 1.41
CCDC40-206ENST00000572083 GAS2L1Q99501 681 aaPredicted RBP23.85■■□□□ 1.41
CCDC40-206ENST00000572083 PBX4Q9BYU1 374 aa23.85■■□□□ 1.41
CCDC40-206ENST00000572083 MROH7Q68CQ1 1323 aa23.84■■□□□ 1.41
CCDC40-206ENST00000572083 DNAJC25-GNG10A0A024R161 153 aa23.84■■□□□ 1.41
CCDC40-206ENST00000572083 TNFRSF10AO00220 468 aa23.84■■□□□ 1.41
CCDC40-206ENST00000572083 DUSP11O75319 330 aaKnown RBP23.84■■□□□ 1.41
CCDC40-206ENST00000572083 CSF2RAP15509 400 aa23.84■■□□□ 1.41
CCDC40-206ENST00000572083 PPIGQ13427 754 aaKnown RBP eCLIP23.84■■□□□ 1.41
CCDC40-206ENST00000572083 MAMDC4Q6UXC1 1216 aa23.84■■□□□ 1.41
CCDC40-206ENST00000572083 PPP1R12CQ9BZL4 782 aa23.84■■□□□ 1.41
CCDC40-206ENST00000572083 XIRP2A4UGR9 3374 aa23.83■■□□□ 1.41
CCDC40-206ENST00000572083 ASGR1P07306 291 aa23.83■■□□□ 1.41
CCDC40-206ENST00000572083 ACRP10323 421 aa23.83■■□□□ 1.41
CCDC40-206ENST00000572083 CST5P28325 142 aaPredicted RBP23.83■■□□□ 1.41
CCDC40-206ENST00000572083 CPXCR1Q8N123 301 aa23.83■■□□□ 1.41
CCDC40-206ENST00000572083 STK11IPQ8N1F8 1099 aa23.83■■□□□ 1.41
CCDC40-206ENST00000572083 VTI1AQ96AJ9 217 aa23.83■■□□□ 1.41
CCDC40-206ENST00000572083 PRDM12Q9H4Q4 367 aa23.83■■□□□ 1.41
CCDC40-206ENST00000572083 ELP1O95163 1332 aa23.83■■□□□ 1.4
CCDC40-206ENST00000572083 CDK7P50613 346 aa23.82■■□□□ 1.4
CCDC40-206ENST00000572083 ACVR2BQ13705 512 aa23.82■■□□□ 1.4
CCDC40-206ENST00000572083 UBE3CQ15386 1083 aa23.82■■□□□ 1.4
CCDC40-206ENST00000572083 HAUS7Q99871 368 aa23.82■■□□□ 1.4
CCDC40-206ENST00000572083 PUS7LQ9H0K6 701 aaKnown RBP23.82■■□□□ 1.4
CCDC40-206ENST00000572083 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.82■■□□□ 1.4
CCDC40-206ENST00000572083 MCM3APO60318 1980 aa23.82■■□□□ 1.4
CCDC40-206ENST00000572083 CHD7Q9P2D1 2997 aa23.81■■□□□ 1.4
CCDC40-206ENST00000572083 A0A0U1RQG5 324 aaPredicted RBP23.81■■□□□ 1.4
CCDC40-206ENST00000572083 NDUFB10O96000 172 aa23.81■■□□□ 1.4
CCDC40-206ENST00000572083 ATP5JP18859 108 aa23.81■■□□□ 1.4
CCDC40-206ENST00000572083 COL9A1P20849 921 aa23.81■■□□□ 1.4
CCDC40-206ENST00000572083 CCDC144BQ3MJ40 725 aa23.81■■□□□ 1.4
CCDC40-206ENST00000572083 RASIP1Q5U651 963 aa23.81■■□□□ 1.4
CCDC40-206ENST00000572083 CCDC174Q6PII3 467 aa23.81■■□□□ 1.4
CCDC40-206ENST00000572083 PCSK9Q8NBP7 692 aaKnown RBP23.81■■□□□ 1.4
CCDC40-206ENST00000572083 ARPP21Q9UBL0 812 aaPredicted RBP23.81■■□□□ 1.4
CCDC40-206ENST00000572083 F5H6K3 240 aa23.8■■□□□ 1.4
CCDC40-206ENST00000572083 RASA1P20936 1047 aa23.8■■□□□ 1.4
CCDC40-206ENST00000572083 KLRC3Q07444 240 aa23.8■■□□□ 1.4
CCDC40-206ENST00000572083 PSRC1Q6PGN9 363 aaPredicted RBP23.8■■□□□ 1.4
CCDC40-206ENST00000572083 ZNF365Q70YC5 407 aa23.8■■□□□ 1.4
CCDC40-206ENST00000572083 ZNF467Q7Z7K2 595 aaPredicted RBP23.8■■□□□ 1.4
CCDC40-206ENST00000572083 SIRT2Q8IXJ6 389 aa23.8■■□□□ 1.4
CCDC40-206ENST00000572083 TMEM199Q8N511 208 aa23.8■■□□□ 1.4
CCDC40-206ENST00000572083 PRPF38AQ8NAV1 312 aaKnown RBP23.8■■□□□ 1.4
CCDC40-206ENST00000572083 KIFC2Q96AC6 838 aa23.8■■□□□ 1.4
CCDC40-206ENST00000572083 FGD4Q96M96 766 aa23.8■■□□□ 1.4
CCDC40-206ENST00000572083 SPC25Q9HBM1 224 aa23.8■■□□□ 1.4
CCDC40-206ENST00000572083 RAVER2Q9HCJ3 691 aaKnown RBP23.8■■□□□ 1.4
CCDC40-206ENST00000572083 CTDP1Q9Y5B0 961 aaPredicted RBP23.8■■□□□ 1.4
CCDC40-206ENST00000572083 ARVCFO00192 962 aa23.79■■□□□ 1.4
CCDC40-206ENST00000572083 HMMRO75330 724 aa23.79■■□□□ 1.4
CCDC40-206ENST00000572083 GJA9P57773 515 aa23.79■■□□□ 1.4
CCDC40-206ENST00000572083 HNRNPUQ00839 825 aaKnown RBP eCLIP23.79■■□□□ 1.4
CCDC40-206ENST00000572083 FAM126BQ8IXS8 530 aa23.79■■□□□ 1.4
CCDC40-206ENST00000572083 ANKRD35Q8N283 1001 aa23.79■■□□□ 1.4
CCDC40-206ENST00000572083 UPF3AQ9H1J1 476 aaKnown RBP23.79■■□□□ 1.4
CCDC40-206ENST00000572083 THEGQ9P2T0 379 aa23.79■■□□□ 1.4
CCDC40-206ENST00000572083 REV3LO60673 3130 aa23.79■■□□□ 1.4
CCDC40-206ENST00000572083 ATP2A1O14983 1001 aa23.78■■□□□ 1.4
CCDC40-206ENST00000572083 ZBED4O75132 1171 aa23.78■■□□□ 1.4
CCDC40-206ENST00000572083 CCDC85BQ15834 202 aaPredicted RBP23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms