RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 ATP2C1P98194 919 aaPredicted RBP11.27□□□□□ -0.61
VPS53-206ENST00000570359 CDC42EP5Q6NZY7 148 aa11.27□□□□□ -0.61
VPS53-206ENST00000570359 RRP36Q96EU6 259 aaKnown RBP11.27□□□□□ -0.61
VPS53-206ENST00000570359 PRDM4Q9UKN5 801 aa11.27□□□□□ -0.61
VPS53-206ENST00000570359 GDF11O95390 407 aa11.27□□□□□ -0.61
VPS53-206ENST00000570359 TOP1P11387 765 aaKnown RBP11.27□□□□□ -0.61
VPS53-206ENST00000570359 CALML3P27482 149 aa11.27□□□□□ -0.61
VPS53-206ENST00000570359 CCT6AP40227 531 aaKnown RBP11.27□□□□□ -0.61
VPS53-206ENST00000570359 STAT6P42226 847 aa11.27□□□□□ -0.61
VPS53-206ENST00000570359 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.27□□□□□ -0.61
VPS53-206ENST00000570359 V9GYY5 206 aaPredicted RBP11.27□□□□□ -0.61
VPS53-206ENST00000570359 PDE6BP35913 854 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 ADKP55263 362 aaKnown RBP11.26□□□□□ -0.61
VPS53-206ENST00000570359 UBE2SQ16763 222 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 RRAGBQ5VZM2 374 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 NEDD1Q8NHV4 660 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 TEKT1Q969V4 418 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 DDX60LQ5H9U9 1706 aaKnown RBP11.26□□□□□ -0.61
VPS53-206ENST00000570359 FAM237AA0A1B0GTK4 181 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 PALM3A6NDB9 673 aaPredicted RBP11.26□□□□□ -0.61
VPS53-206ENST00000570359 SLFN14P0C7P3 912 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 GNAQP50148 359 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 IKQ13123 557 aaPredicted RBP11.26□□□□□ -0.61
VPS53-206ENST00000570359 EZH2Q15910 746 aaKnown RBP11.26□□□□□ -0.61
VPS53-206ENST00000570359 FERMT2Q96AC1 680 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 AKT1S1Q96B36 256 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 MASTLQ96GX5 879 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 MED15Q96RN5 788 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 BPIFA3Q9BQP9 254 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 TRIM34Q9BYJ4 488 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 BARHL2Q9NY43 387 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 SERPINB13Q9UIV8 391 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 GDAQ9Y2T3 454 aa11.26□□□□□ -0.61
VPS53-206ENST00000570359 CDK5RAP2Q96SN8 1893 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 H0YIN7 160 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 ALDH1B1P30837 517 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 CRKP46108 304 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 TNNI2P48788 182 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 MORC3Q14149 939 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 NAA30Q147X3 362 aaPredicted RBP11.25□□□□□ -0.61
VPS53-206ENST00000570359 DTHD1Q6ZMT9 781 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 C15orf52Q6ZUT6 534 aaKnown RBP11.25□□□□□ -0.61
VPS53-206ENST00000570359 ZNF579Q8NAF0 562 aaKnown RBP11.25□□□□□ -0.61
VPS53-206ENST00000570359 CCDC148Q8NFR7 591 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 SYNRGQ9UMZ2 1314 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 ANKRD31Q8N7Z5 1873 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 IKBKBO14920 756 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 GAKO14976 1311 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 C21orf2O43822 256 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 ECE2O60344 883 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 TECP42680 631 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 DPYDQ12882 1025 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 KLHL34Q8N239 644 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 INTS13Q9NVM9 706 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 DLEC1Q9Y238 1755 aa11.25□□□□□ -0.61
VPS53-206ENST00000570359 ROBO3Q96MS0 1386 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 PDHBP11177 359 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 TXLNAP40222 546 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 UBA7P41226 1012 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 TXKP42681 527 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 PTPN14Q15678 1187 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 IQUBQ8NA54 791 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 TBCKQ8TEA7 893 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 CCDC34Q96HJ3 373 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 NUP88Q99567 741 aaPredicted RBP11.24□□□□□ -0.61
VPS53-206ENST00000570359 MTRQ99707 1265 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 TDRD3Q9H7E2 651 aaKnown RBP11.24□□□□□ -0.61
VPS53-206ENST00000570359 MTMR4Q9NYA4 1195 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 ERCC3P19447 782 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 RXRBP28702 533 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 CEP135Q66GS9 1140 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 POTEDQ86YR6 584 aa11.24□□□□□ -0.61
VPS53-206ENST00000570359 CLRN2A0PK11 232 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 TRIM49BA6NDI0 452 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 DDTLA6NHG4 134 aaPredicted RBP11.23□□□□□ -0.61
VPS53-206ENST00000570359 TEX33O43247 280 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 HLA-DOAP06340 250 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 GSDMDP57764 484 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 APOBEC3HQ6NTF7 200 aaKnown RBP11.23□□□□□ -0.61
VPS53-206ENST00000570359 KANK3Q6NY19 840 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 MLKLQ8NB16 471 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 MYRIPQ8NFW9 859 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 OSBPL5Q9H0X9 879 aaPredicted RBP11.23□□□□□ -0.61
VPS53-206ENST00000570359 C6orf50Q9HD87 102 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 PPP1R1BQ9UD71 204 aaPredicted RBP11.23□□□□□ -0.61
VPS53-206ENST00000570359 DACH1Q9UI36 760 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 USP17L10C9JJH3 530 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 BMP15O95972 392 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 GPIHBP1Q8IV16 184 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 SPICE1Q8N0Z3 855 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 REXO1Q8N1G1 1221 aaKnown RBP11.23□□□□□ -0.61
VPS53-206ENST00000570359 HPS3Q969F9 1004 aa11.23□□□□□ -0.61
VPS53-206ENST00000570359 CBFA2T2O43439 604 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 MARCH6O60337 910 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 TDP2O95551 362 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 SHMT1P34896 483 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 SARSP49591 514 aaKnown RBP11.22□□□□□ -0.61
VPS53-206ENST00000570359 NONOQ15233 471 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS53-206ENST00000570359 CCDC178Q5BJE1 867 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 VPS16Q9H269 839 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms