RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CA3P07451 260 aa22.03■■□□□ 1.12
CLK3-227ENST00000570296 GJA9P57773 515 aa22.03■■□□□ 1.12
CLK3-227ENST00000570296 MTX1Q13505 466 aa22.03■■□□□ 1.12
CLK3-227ENST00000570296 MAMDC4Q6UXC1 1216 aa22.03■■□□□ 1.12
CLK3-227ENST00000570296 ZBBXA8MT70 800 aa22.02■■□□□ 1.12
CLK3-227ENST00000570296 CYP7A1P22680 504 aa22.02■■□□□ 1.12
CLK3-227ENST00000570296 PLCD1P51178 756 aa22.02■■□□□ 1.12
CLK3-227ENST00000570296 GNASQ5JWF2 1037 aa22.02■■□□□ 1.12
CLK3-227ENST00000570296 TTC39AQ5SRH9 613 aa22.02■■□□□ 1.12
CLK3-227ENST00000570296 KRT40Q6A162 431 aa22.02■■□□□ 1.12
CLK3-227ENST00000570296 SLC43A3Q8NBI5 491 aa22.02■■□□□ 1.12
CLK3-227ENST00000570296 ZNF318Q5VUA4 2279 aa22.02■■□□□ 1.12
CLK3-227ENST00000570296 UMODL1Q5DID0 1318 aa22.02■■□□□ 1.12
CLK3-227ENST00000570296 EPOPA6NHQ4 379 aa22.01■■□□□ 1.11
CLK3-227ENST00000570296 MPHOSPH10O00566 681 aaKnown RBP22.01■■□□□ 1.11
CLK3-227ENST00000570296 WDR46O15213 610 aaKnown RBP22.01■■□□□ 1.11
CLK3-227ENST00000570296 ALADP13716 330 aa22.01■■□□□ 1.11
CLK3-227ENST00000570296 STAT3P40763 770 aa22.01■■□□□ 1.11
CLK3-227ENST00000570296 IRX5P78411 483 aaPredicted RBP22.01■■□□□ 1.11
CLK3-227ENST00000570296 GABPAQ06546 454 aa22.01■■□□□ 1.11
CLK3-227ENST00000570296 UIMC1Q96RL1 719 aa22.01■■□□□ 1.11
CLK3-227ENST00000570296 NOC4LQ9BVI4 516 aaKnown RBP22.01■■□□□ 1.11
CLK3-227ENST00000570296 SH2D4AQ9H788 454 aa22.01■■□□□ 1.11
CLK3-227ENST00000570296 MCM3APO60318 1980 aa22.01■■□□□ 1.11
CLK3-227ENST00000570296 CCL23P55773 120 aa22■■□□□ 1.11
CLK3-227ENST00000570296 CSPP1Q1MSJ5 1256 aa22■■□□□ 1.11
CLK3-227ENST00000570296 SAMD1Q6SPF0 538 aaPredicted RBP22■■□□□ 1.11
CLK3-227ENST00000570296 TMEM179Q6ZVK1 233 aa22■■□□□ 1.11
CLK3-227ENST00000570296 GJD3Q8N144 294 aa22■■□□□ 1.11
CLK3-227ENST00000570296 MIGA1Q8NAN2 632 aa22■■□□□ 1.11
CLK3-227ENST00000570296 FBXL18Q96ME1 805 aa22■■□□□ 1.11
CLK3-227ENST00000570296 SEZ6LQ9BYH1 1024 aa22■■□□□ 1.11
CLK3-227ENST00000570296 CERS4Q9HA82 394 aa22■■□□□ 1.11
CLK3-227ENST00000570296 PIH1D3Q9NQM4 214 aaKnown RBP22■■□□□ 1.11
CLK3-227ENST00000570296 NAV1Q8NEY1 1877 aa22■■□□□ 1.11
CLK3-227ENST00000570296 MYH8P13535 1937 aa22■■□□□ 1.11
CLK3-227ENST00000570296 PFKMP08237 780 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 NKX3-2P78367 333 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 ACVR2BQ13705 512 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 ALDH1L2Q3SY69 923 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 CCDC158Q5M9N0 1113 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 ZNF467Q7Z7K2 595 aaPredicted RBP21.99■■□□□ 1.11
CLK3-227ENST00000570296 SPICE1Q8N0Z3 855 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 MEIS3Q99687 375 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 WNT8AQ9H1J5 351 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 VCPKMTQ9H867 229 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 ARHGEF10LQ9HCE6 1279 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 TMX2Q9Y320 296 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 ZDBF2Q9HCK1 2354 aa21.99■■□□□ 1.11
CLK3-227ENST00000570296 ADCY6O43306 1168 aa21.98■■□□□ 1.11
CLK3-227ENST00000570296 CABYRO75952 493 aa21.98■■□□□ 1.11
CLK3-227ENST00000570296 ARNTL2Q8WYA1 636 aa21.98■■□□□ 1.11
CLK3-227ENST00000570296 ZNF512BQ96KM6 892 aaPredicted RBP21.98■■□□□ 1.11
CLK3-227ENST00000570296 ZNF214Q9UL59 606 aaPredicted RBP21.98■■□□□ 1.11
CLK3-227ENST00000570296 COL4A4P53420 1690 aaPredicted RBP21.98■■□□□ 1.11
CLK3-227ENST00000570296 VWA5AO00534 786 aa21.97■■□□□ 1.11
CLK3-227ENST00000570296 CTAGE5O15320 804 aa21.97■■□□□ 1.11
CLK3-227ENST00000570296 ZAP70P43403 619 aa21.97■■□□□ 1.11
CLK3-227ENST00000570296 CCDC144BQ3MJ40 725 aa21.97■■□□□ 1.11
CLK3-227ENST00000570296 TMED8Q6PL24 325 aaPredicted RBP21.97■■□□□ 1.11
CLK3-227ENST00000570296 FAM178BQ8IXR5 827 aa21.97■■□□□ 1.11
CLK3-227ENST00000570296 VWCEQ96DN2 955 aa21.97■■□□□ 1.11
CLK3-227ENST00000570296 ABHD16BQ9H3Z7 469 aa21.97■■□□□ 1.11
CLK3-227ENST00000570296 MRS2Q9HD23 443 aa21.97■■□□□ 1.11
CLK3-227ENST00000570296 POLR3DP05423 398 aaPredicted RBP21.96■■□□□ 1.11
CLK3-227ENST00000570296 TAP1Q03518 808 aa21.96■■□□□ 1.11
CLK3-227ENST00000570296 G3BP1Q13283 466 aaKnown RBP eCLIP21.96■■□□□ 1.11
CLK3-227ENST00000570296 GRB10Q13322 594 aa21.96■■□□□ 1.11
CLK3-227ENST00000570296 DDX11Q96FC9 970 aa21.96■■□□□ 1.11
CLK3-227ENST00000570296 SLC9A7Q96T83 725 aa21.96■■□□□ 1.11
CLK3-227ENST00000570296 GPR108Q9NPR9 543 aa21.96■■□□□ 1.11
CLK3-227ENST00000570296 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.96■■□□□ 1.11
CLK3-227ENST00000570296 DNAJC25-GNG10A0A024R161 153 aa21.95■■□□□ 1.1
CLK3-227ENST00000570296 TTLL4Q14679 1199 aa21.95■■□□□ 1.1
CLK3-227ENST00000570296 SIAH1Q8IUQ4 282 aa21.95■■□□□ 1.1
CLK3-227ENST00000570296 MAGEB6Q8N7X4 407 aa21.95■■□□□ 1.1
CLK3-227ENST00000570296 REPS2Q8NFH8 660 aa21.95■■□□□ 1.1
CLK3-227ENST00000570296 PHOSPHO2Q8TCD6 241 aa21.95■■□□□ 1.1
CLK3-227ENST00000570296 SMC4Q9NTJ3 1288 aa21.95■■□□□ 1.1
CLK3-227ENST00000570296 LMCD1Q9NZU5 365 aa21.95■■□□□ 1.1
CLK3-227ENST00000570296 PPP1R9AQ9ULJ8 1098 aa21.95■■□□□ 1.1
CLK3-227ENST00000570296 USP34Q70CQ2 3546 aa21.94■■□□□ 1.1
CLK3-227ENST00000570296 IDH1O75874 414 aaKnown RBP21.94■■□□□ 1.1
CLK3-227ENST00000570296 GNAI3P08754 354 aa21.94■■□□□ 1.1
CLK3-227ENST00000570296 ICA1Q05084 483 aa21.94■■□□□ 1.1
CLK3-227ENST00000570296 ITGA7Q13683 1181 aa21.94■■□□□ 1.1
CLK3-227ENST00000570296 AGBL1Q96MI9 1066 aa21.94■■□□□ 1.1
CLK3-227ENST00000570296 DBNDD2Q9BQY9 259 aa21.94■■□□□ 1.1
CLK3-227ENST00000570296 FBXO28Q9NVF7 368 aa21.94■■□□□ 1.1
CLK3-227ENST00000570296 LPXNO60711 386 aa21.93■■□□□ 1.1
CLK3-227ENST00000570296 SSTR3P32745 418 aaPredicted RBP21.93■■□□□ 1.1
CLK3-227ENST00000570296 CXCL17Q6UXB2 119 aa21.93■■□□□ 1.1
CLK3-227ENST00000570296 SCLYQ96I15 445 aa21.93■■□□□ 1.1
CLK3-227ENST00000570296 TEX13BQ9BXU2 312 aa21.93■■□□□ 1.1
CLK3-227ENST00000570296 API5Q9BZZ5 524 aaKnown RBP21.93■■□□□ 1.1
CLK3-227ENST00000570296 TRPV6Q9H1D0 765 aa21.93■■□□□ 1.1
CLK3-227ENST00000570296 ACTN1P12814 892 aa21.92■■□□□ 1.1
CLK3-227ENST00000570296 LEXMQ3ZCV2 418 aa21.92■■□□□ 1.1
CLK3-227ENST00000570296 TNNI3KQ59H18 835 aa21.92■■□□□ 1.1
CLK3-227ENST00000570296 UBE2ZQ9H832 354 aaPredicted RBP21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms