RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	SYNRG	Q9UMZ2	1314 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	DNAJC25-GNG10	A0A024R161	153 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	SNAI1	O95863	264 aa	Predicted RBP	13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	IFIT2	P09913	472 aa	Known RBP	13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	DNAJB2	P25686	324 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	FAM83B	Q5T0W9	1011 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	MAMDC4	Q6UXC1	1216 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	AMOTL1	Q8IY63	956 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	USP38	Q8NB14	1042 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	NUP133	Q8WUM0	1156 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	STARD7	Q9NQZ5	370 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	TBX21	Q9UL17	535 aa		13.7	□□□□□ -0.22
TCF4-238	ENST00000568169	SYNGAP1	Q96PV0	1343 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	MOXD2P	A6NHM9	499 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	TIMP1	P01033	207 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	UBE3C	Q15386	1083 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	KCNA10	Q16322	511 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	PANK1	Q8TE04	598 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	TEX13B	Q9BXU2	312 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.69	□□□□□ -0.22	1e-6	■■■■■ 27.7
TCF4-238	ENST00000568169	BOLA2	Q9H3K6	86 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	ZNF576	Q9H609	170 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	FAM184B	Q9ULE4	1060 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	PRUNE2	Q8WUY3	3088 aa		13.69	□□□□□ -0.22
TCF4-238	ENST00000568169	ELP1	O95163	1332 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	APBB1	O00213	710 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	DUSP11	O75319	330 aa	Known RBP	13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	CHGB	P05060	677 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	ATP5J	P18859	108 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	CST5	P28325	142 aa	Predicted RBP	13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	CDK7	P50613	346 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	TJAP1	Q5JTD0	557 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	MFSD5	Q6N075	450 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	CTR9	Q6PD62	1173 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	C16orf59	Q7L2K0	433 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	DDX11	Q96FC9	970 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	DDRGK1	Q96HY6	314 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	HAUS7	Q99871	368 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	SLF1	Q9BQI6	1058 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	RIPK3	Q9Y572	518 aa		13.68	□□□□□ -0.22
TCF4-238	ENST00000568169	MYADML2	A6NDP7	307 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	ATP2A1	O14983	1001 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	RAD21	O60216	631 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	RAB11FIP3	O75154	756 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	TMEM240	Q5SV17	173 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	RASIP1	Q5U651	963 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	SNRNP48	Q6IEG0	339 aa	Known RBP	13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	SIRT2	Q8IXJ6	389 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	TIFA	Q96CG3	184 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	GLT1D1	Q96MS3	346 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	NUP88	Q99567	741 aa	Predicted RBP	13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	SLC4A4	Q9Y6R1	1079 aa		13.67	□□□□□ -0.22
TCF4-238	ENST00000568169	MROH7	Q68CQ1	1323 aa		13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	EYS	Q5T1H1	3165 aa		13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	TCF20	Q9UGU0	1960 aa	Known RBP	13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	HMMR	O75330	724 aa		13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	IRX5	P78411	483 aa	Predicted RBP	13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	PPIG	Q13427	754 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	PRPF38A	Q8NAV1	312 aa	Known RBP	13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	PCSK9	Q8NBP7	692 aa	Known RBP	13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	UPF3A	Q9H1J1	476 aa	Known RBP	13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	NYAP2	Q9P242	653 aa		13.66	□□□□□ -0.22
TCF4-238	ENST00000568169	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.66	□□□□□ -0.22
TCF4-238	ENST00000568169		F5H6K3	240 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	ARVCF	O00192	962 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	ADCY6	O43306	1168 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	NDUFB10	O96000	172 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	ASGR1	P07306	291 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	C6orf222	P0C671	652 aa	Predicted RBP	13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	RASA1	P20936	1047 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	PBX2	P40425	430 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	GJA9	P57773	515 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	KLRC3	Q07444	240 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	ACVR2B	Q13705	512 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	SBK1	Q52WX2	424 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	CCDC174	Q6PII3	467 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	FGD4	Q96M96	766 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	PBX4	Q9BYU1	374 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	PUS7L	Q9H0K6	701 aa	Known RBP	13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	ABHD16B	Q9H3Z7	469 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	CDH23	Q9H251	3354 aa		13.65	□□□□□ -0.22
TCF4-238	ENST00000568169	VCAN	P13611	3396 aa		13.65	□□□□□ -0.23
TCF4-238	ENST00000568169	GRXCR1	A8MXD5	290 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	TNFRSF10A	O00220	468 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	CTAGE5	O15320	804 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	CSF2RA	P15509	400 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	NKX3-2	P78367	333 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	CCDC144B	Q3MJ40	725 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	AKNAD1	Q5T1N1	836 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	ZSCAN25	Q6NSZ9	544 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	ZNF365	Q70YC5	407 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	FAM126B	Q8IXS8	530 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	CPXCR1	Q8N123	301 aa		13.64	□□□□□ -0.23

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