RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZBTB47Q9UFB7 747 aaPredicted RBP19.14■□□□□ 0.65
CLN3-229ENST00000567963 PLIN4Q96Q06 1357 aa19.13■□□□□ 0.65
CLN3-229ENST00000567963 COL6A3P12111 3177 aa19.13■□□□□ 0.65
CLN3-229ENST00000567963 ZBED4O75132 1171 aa19.13■□□□□ 0.65
CLN3-229ENST00000567963 TFAP4Q01664 338 aa19.13■□□□□ 0.65
CLN3-229ENST00000567963 LRRC41Q15345 812 aa19.13■□□□□ 0.65
CLN3-229ENST00000567963 FAM47AQ5JRC9 791 aa19.13■□□□□ 0.65
CLN3-229ENST00000567963 FEM1BQ9UK73 627 aa19.13■□□□□ 0.65
CLN3-229ENST00000567963 LAMA2P24043 3122 aaKnown RBP19.12■□□□□ 0.65
CLN3-229ENST00000567963 FOXP2O15409 715 aa19.12■□□□□ 0.65
CLN3-229ENST00000567963 MYCNP04198 464 aaPredicted RBP19.12■□□□□ 0.65
CLN3-229ENST00000567963 RTP1P59025 263 aa19.12■□□□□ 0.65
CLN3-229ENST00000567963 GPR153Q6NV75 609 aa19.12■□□□□ 0.65
CLN3-229ENST00000567963 CPXCR1Q8N123 301 aa19.12■□□□□ 0.65
CLN3-229ENST00000567963 LRRC47Q8N1G4 583 aaKnown RBP19.12■□□□□ 0.65
CLN3-229ENST00000567963 KIFC2Q96AC6 838 aa19.12■□□□□ 0.65
CLN3-229ENST00000567963 SLC38A10Q9HBR0 1119 aa19.12■□□□□ 0.65
CLN3-229ENST00000567963 ZNF865P0CJ78 1059 aaPredicted RBP19.11■□□□□ 0.65
CLN3-229ENST00000567963 RARBP10826 455 aa19.11■□□□□ 0.65
CLN3-229ENST00000567963 TAL1P17542 331 aaPredicted RBP19.11■□□□□ 0.65
CLN3-229ENST00000567963 HDAC1Q13547 482 aaPredicted RBP19.11■□□□□ 0.65
CLN3-229ENST00000567963 CCDC129Q6ZRS4 1044 aa19.11■□□□□ 0.65
CLN3-229ENST00000567963 EVI5LQ96CN4 794 aa19.11■□□□□ 0.65
CLN3-229ENST00000567963 DDX11Q96FC9 970 aa19.11■□□□□ 0.65
CLN3-229ENST00000567963 CTDP1Q9Y5B0 961 aaPredicted RBP19.11■□□□□ 0.65
CLN3-229ENST00000567963 DNAJC25-GNG10A0A024R161 153 aa19.1■□□□□ 0.65
CLN3-229ENST00000567963 BMP3P12645 472 aa19.1■□□□□ 0.65
CLN3-229ENST00000567963 ADCYAP1R1P41586 468 aa19.1■□□□□ 0.65
CLN3-229ENST00000567963 SLC4A3P48751 1232 aa19.1■□□□□ 0.65
CLN3-229ENST00000567963 SLFN13Q68D06 897 aa19.1■□□□□ 0.65
CLN3-229ENST00000567963 MSL3Q8N5Y2 521 aaKnown RBP19.1■□□□□ 0.65
CLN3-229ENST00000567963 LBHD1Q9BQE6 289 aaPredicted RBP19.1■□□□□ 0.65
CLN3-229ENST00000567963 RAVER2Q9HCJ3 691 aaKnown RBP19.1■□□□□ 0.65
CLN3-229ENST00000567963 XPNPEP3Q9NQH7 507 aa19.1■□□□□ 0.65
CLN3-229ENST00000567963 PRKAG2Q9UGJ0 569 aa19.1■□□□□ 0.65
CLN3-229ENST00000567963 ATP11BQ9Y2G3 1177 aa19.1■□□□□ 0.65
CLN3-229ENST00000567963 PDE1AP54750 535 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 CTDSPL2Q05D32 466 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 SNX17Q15036 470 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 MAMDC4Q6UXC1 1216 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.09■□□□□ 0.65
CLN3-229ENST00000567963 FERMT2Q96AC1 680 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 INCENPQ9NQS7 918 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 CNPY2Q9Y2B0 182 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.09■□□□□ 0.65
CLN3-229ENST00000567963 SNAI1O95863 264 aaPredicted RBP19.09■□□□□ 0.65
CLN3-229ENST00000567963 AKR1A1P14550 325 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 OAZ1P54368 228 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 C1orf53Q5VUE5 145 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 HELLSQ9NRZ9 838 aa19.09■□□□□ 0.65
CLN3-229ENST00000567963 SYNGAP1Q96PV0 1343 aa19.08■□□□□ 0.65
CLN3-229ENST00000567963 TMEM232C9JQI7 657 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 PGK1P00558 417 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 FDX1P10109 184 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 PPP4R3BQ5MIZ7 849 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 VPS53Q5VIR6 699 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 RNF180Q86T96 592 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 CHST13Q8NET6 341 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 GMCL1Q96IK5 515 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 IL17RBQ9NRM6 502 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 FBXO40Q9UH90 709 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 ANAPC4Q9UJX5 808 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 PHF24Q9UPV7 400 aa19.08■□□□□ 0.64
CLN3-229ENST00000567963 TSPY2A6NKD2 308 aa19.07■□□□□ 0.64
CLN3-229ENST00000567963 SLC1A4P43007 532 aa19.07■□□□□ 0.64
CLN3-229ENST00000567963 STAT2P52630 851 aa19.07■□□□□ 0.64
CLN3-229ENST00000567963 TRIM60Q495X7 471 aa19.07■□□□□ 0.64
CLN3-229ENST00000567963 ZNF467Q7Z7K2 595 aaPredicted RBP19.07■□□□□ 0.64
CLN3-229ENST00000567963 ANKRD35Q8N283 1001 aa19.07■□□□□ 0.64
CLN3-229ENST00000567963 CHURC1Q8WUH1 139 aa19.07■□□□□ 0.64
CLN3-229ENST00000567963 STX8Q9UNK0 236 aa19.07■□□□□ 0.64
CLN3-229ENST00000567963 TACC3Q9Y6A5 838 aa19.07■□□□□ 0.64
CLN3-229ENST00000567963 MCCP23508 829 aa19.06■□□□□ 0.64
CLN3-229ENST00000567963 ALX1Q15699 326 aa19.06■□□□□ 0.64
CLN3-229ENST00000567963 FAM160B2Q86V87 743 aa19.06■□□□□ 0.64
CLN3-229ENST00000567963 DEFB123Q8N688 67 aa19.06■□□□□ 0.64
CLN3-229ENST00000567963 STAG1Q8WVM7 1258 aa19.06■□□□□ 0.64
CLN3-229ENST00000567963 LTBP2Q14767 1821 aa19.05■□□□□ 0.64
CLN3-229ENST00000567963 NMT2O60551 498 aa19.05■□□□□ 0.64
CLN3-229ENST00000567963 ADAMTS4O75173 837 aa19.05■□□□□ 0.64
CLN3-229ENST00000567963 FGRP09769 529 aa19.05■□□□□ 0.64
CLN3-229ENST00000567963 TICAM2Q86XR7 235 aa19.05■□□□□ 0.64
CLN3-229ENST00000567963 LENG1Q96BZ8 264 aaPredicted RBP19.05■□□□□ 0.64
CLN3-229ENST00000567963 FAM227BQ96M60 508 aa19.05■□□□□ 0.64
CLN3-229ENST00000567963 FAM184BQ9ULE4 1060 aa19.05■□□□□ 0.64
CLN3-229ENST00000567963 ISY1Q9ULR0 285 aaKnown RBP19.05■□□□□ 0.64
CLN3-229ENST00000567963 RANBP6O60518 1105 aaKnown RBP19.04■□□□□ 0.64
CLN3-229ENST00000567963 PLA2G6O60733 806 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 FGAP02671 866 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 NOVP48745 357 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 AAMPQ13685 434 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 MCMDC2Q4G0Z9 681 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 RCSD1Q6JBY9 416 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 Q7L0L9 218 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 CHMP4CQ96CF2 233 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 FGD4Q96M96 766 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 TSEN34Q9BSV6 310 aaKnown RBP19.04■□□□□ 0.64
CLN3-229ENST00000567963 PRDM5Q9NQX1 630 aaPredicted RBP19.04■□□□□ 0.64
CLN3-229ENST00000567963 PDLIM7Q9NR12 457 aa19.04■□□□□ 0.64
CLN3-229ENST00000567963 ZNF536O15090 1300 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms