RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 CLUL1Q15846 466 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 TCEAL5Q5H9L2 206 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 NCAPG2Q86XI2 1143 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 BANK1Q8NDB2 785 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 SPC25Q9HBM1 224 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 GINM1Q9NU53 330 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 CTNNA3Q9UI47 895 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 ZBTB21Q9ULJ3 1066 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 SALL1Q9NSC2 1324 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 VPS13AQ96RL7 3174 aa11.28□□□□□ -0.6
SMPD3-206ENST00000566009 PDGFBP01127 241 aaPredicted RBP11.28□□□□□ -0.6
SMPD3-206ENST00000566009 FGFR2P21802 821 aa11.28□□□□□ -0.6
SMPD3-206ENST00000566009 TMCO2Q7Z6W1 182 aaPredicted RBP11.28□□□□□ -0.6
SMPD3-206ENST00000566009 DNAAF4Q8WXU2 420 aa11.28□□□□□ -0.6
SMPD3-206ENST00000566009 FEZ1Q99689 392 aa11.28□□□□□ -0.6
SMPD3-206ENST00000566009 ZBED2Q9BTP6 218 aa11.28□□□□□ -0.6
SMPD3-206ENST00000566009 PI4KBQ9UBF8 816 aa11.28□□□□□ -0.6
SMPD3-206ENST00000566009 FAM208BQ5VWN6 2430 aa11.28□□□□□ -0.6
SMPD3-206ENST00000566009 USP24Q9UPU5 2620 aa11.27□□□□□ -0.6
SMPD3-206ENST00000566009 EP300Q09472 2414 aaPredicted RBP11.27□□□□□ -0.6
SMPD3-206ENST00000566009 GPR75-ASB3A0A0A6YYF3 556 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 LINC01553A4QN01 128 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 PGK2P07205 417 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 ZNF853P0CG23 659 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 GJA9P57773 515 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 ITGA7Q13683 1181 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 PTPROQ16827 1216 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 ZNF792Q3KQV3 632 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 TIGD5Q53EQ6 642 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 SLF2Q8IX21 1173 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 UPF3AQ9H1J1 476 aaKnown RBP11.27□□□□□ -0.61
SMPD3-206ENST00000566009 RPAP3Q9H6T3 665 aaPredicted RBP11.27□□□□□ -0.61
SMPD3-206ENST00000566009 DIS3Q9Y2L1 958 aaKnown RBP11.27□□□□□ -0.61
SMPD3-206ENST00000566009 GRIN2DO15399 1336 aa11.27□□□□□ -0.61
SMPD3-206ENST00000566009 CTAGE5O15320 804 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 DLX2Q07687 328 aaPredicted RBP11.26□□□□□ -0.61
SMPD3-206ENST00000566009 PLS1Q14651 629 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 COG2Q14746 738 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 PUM3Q15397 648 aaKnown RBP11.26□□□□□ -0.61
SMPD3-206ENST00000566009 CXCL17Q6UXB2 119 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 RPAINQ86UA6 219 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 DZIP1Q86YF9 867 aaKnown RBP11.26□□□□□ -0.61
SMPD3-206ENST00000566009 TMEM105Q8N8V8 129 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 FBXO22Q8NEZ5 403 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 RIPOR3Q96MK2 946 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 FTOQ9C0B1 505 aaKnown RBP eCLIP11.26□□□□□ -0.61
SMPD3-206ENST00000566009 DNAJC18Q9H819 358 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 HOXC10Q9NYD6 342 aa11.26□□□□□ -0.61
SMPD3-206ENST00000566009 ZHX1Q9UKY1 873 aaPredicted RBP11.26□□□□□ -0.61
SMPD3-206ENST00000566009 ANKRD11Q6UB99 2663 aaPredicted RBP11.25□□□□□ -0.61
SMPD3-206ENST00000566009 ZNFX1Q9P2E3 1918 aaKnown RBP11.25□□□□□ -0.61
SMPD3-206ENST00000566009 MYH13Q9UKX3 1938 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 SCN5AQ14524 2016 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 LOC730098B7Z3J9 87 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 ADCY6O43306 1168 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 SNAI1O95863 264 aaPredicted RBP11.25□□□□□ -0.61
SMPD3-206ENST00000566009 KCNJ6P48051 423 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 USP14P54578 494 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 MKRN4PQ13434 485 aaPredicted RBP11.25□□□□□ -0.61
SMPD3-206ENST00000566009 SMAD4Q13485 552 aaKnown RBP11.25□□□□□ -0.61
SMPD3-206ENST00000566009 RSPO4Q2I0M5 234 aaPredicted RBP11.25□□□□□ -0.61
SMPD3-206ENST00000566009 KCNG4Q8TDN1 519 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 MMP19Q99542 508 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 RAD9AQ99638 391 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 C17orf80Q9BSJ5 609 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 STK31Q9BXU1 1019 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 KIAA1683Q9H0B3 1180 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 MROH7-TTC4A0A0A0MT08 1334 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 ZNF292O60281 2723 aa11.25□□□□□ -0.61
SMPD3-206ENST00000566009 SETXQ7Z333 2677 aaKnown RBP11.24□□□□□ -0.61
SMPD3-206ENST00000566009 NCK2O43639 380 aa11.24□□□□□ -0.61
SMPD3-206ENST00000566009 BAIAP3O94812 1187 aa11.24□□□□□ -0.61
SMPD3-206ENST00000566009 CYP2C9P11712 490 aa11.24□□□□□ -0.61
SMPD3-206ENST00000566009 RFC2P35250 354 aa11.24□□□□□ -0.61
SMPD3-206ENST00000566009 BEX3Q00994 111 aa11.24□□□□□ -0.61
SMPD3-206ENST00000566009 CBX2Q14781 532 aaPredicted RBP11.24□□□□□ -0.61
SMPD3-206ENST00000566009 CTC1Q2NKJ3 1217 aa11.24□□□□□ -0.61
SMPD3-206ENST00000566009 FOXP4Q8IVH2 680 aaPredicted RBP11.24□□□□□ -0.61
SMPD3-206ENST00000566009 ZGPATQ8N5A5 531 aaKnown RBP11.24□□□□□ -0.61
SMPD3-206ENST00000566009 TSPYL6Q8N831 410 aa11.24□□□□□ -0.61
SMPD3-206ENST00000566009 SEZ6LQ9BYH1 1024 aa11.24□□□□□ -0.61
SMPD3-206ENST00000566009 NSUN3Q9H649 340 aaKnown RBP11.24□□□□□ -0.61
SMPD3-206ENST00000566009 SIP14410 1827 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 GRM8O00222 908 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 CABYRO75952 493 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 GH2P01242 217 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 LMNAP02545 664 aaKnown RBP11.23□□□□□ -0.61
SMPD3-206ENST00000566009 NKX3-2P78367 333 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 TRIM26Q12899 539 aaPredicted RBP11.23□□□□□ -0.61
SMPD3-206ENST00000566009 KIAA0319Q5VV43 1072 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 METTL16Q86W50 562 aaKnown RBP11.23□□□□□ -0.61
SMPD3-206ENST00000566009 ACER1Q8TDN7 264 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 SIL1Q9H173 461 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 GNL3LQ9NVN8 582 aaKnown RBP11.23□□□□□ -0.61
SMPD3-206ENST00000566009 ABCF2Q9UG63 623 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 DENND2AQ9ULE3 1009 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 PCDHGC5Q9Y5F6 944 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 TNKSO95271 1327 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 PTPRSQ13332 1948 aa11.23□□□□□ -0.61
SMPD3-206ENST00000566009 SPTBN2O15020 2390 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms