RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 LRRC26Q2I0M4 334 aa18.6■□□□□ 0.57
CDH3-204ENST00000565453 PRAMEF19Q5SWL8 479 aa18.6■□□□□ 0.57
CDH3-204ENST00000565453 SLFN13Q68D06 897 aa18.6■□□□□ 0.57
CDH3-204ENST00000565453 ZNF589Q86UQ0 364 aaPredicted RBP18.6■□□□□ 0.57
CDH3-204ENST00000565453 PLEKHM2Q8IWE5 1019 aa18.6■□□□□ 0.57
CDH3-204ENST00000565453 OSBPL3Q9H4L5 887 aa18.6■□□□□ 0.57
CDH3-204ENST00000565453 SLC38A10Q9HBR0 1119 aa18.6■□□□□ 0.57
CDH3-204ENST00000565453 IL17RBQ9NRM6 502 aa18.6■□□□□ 0.57
CDH3-204ENST00000565453 FEM1BQ9UK73 627 aa18.6■□□□□ 0.57
CDH3-204ENST00000565453 RIPK3Q9Y572 518 aa18.6■□□□□ 0.57
CDH3-204ENST00000565453 BMP3P12645 472 aa18.59■□□□□ 0.57
CDH3-204ENST00000565453 NOVP48745 357 aa18.59■□□□□ 0.57
CDH3-204ENST00000565453 SNRNP48Q6IEG0 339 aaKnown RBP18.59■□□□□ 0.57
CDH3-204ENST00000565453 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.59■□□□□ 0.57
CDH3-204ENST00000565453 KIFC2Q96AC6 838 aa18.59■□□□□ 0.57
CDH3-204ENST00000565453 GDF15Q99988 308 aa18.59■□□□□ 0.57
CDH3-204ENST00000565453 PCDH10Q9P2E7 1040 aa18.59■□□□□ 0.57
CDH3-204ENST00000565453 ZMYND8Q9ULU4 1186 aaPredicted RBP18.59■□□□□ 0.57
CDH3-204ENST00000565453 TRIOBPQ9H2D6 2365 aa18.59■□□□□ 0.57
CDH3-204ENST00000565453 PLXNA1Q9UIW2 1896 aa18.58■□□□□ 0.57
CDH3-204ENST00000565453 ZMYM6O95789 1325 aa18.58■□□□□ 0.57
CDH3-204ENST00000565453 DNM1LO00429 736 aa18.58■□□□□ 0.56
CDH3-204ENST00000565453 ORC4O43929 436 aa18.58■□□□□ 0.56
CDH3-204ENST00000565453 ZBED4O75132 1171 aa18.58■□□□□ 0.56
CDH3-204ENST00000565453 FGAP02671 866 aa18.58■□□□□ 0.56
CDH3-204ENST00000565453 HSPD1P10809 573 aaKnown RBP18.58■□□□□ 0.56
CDH3-204ENST00000565453 GMCL1Q96IK5 515 aa18.58■□□□□ 0.56
CDH3-204ENST00000565453 TINF2Q9BSI4 451 aa18.58■□□□□ 0.56
CDH3-204ENST00000565453 NRBP1Q9UHY1 535 aa18.58■□□□□ 0.56
CDH3-204ENST00000565453 DNAJC25-GNG10A0A024R161 153 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 A0A1W2PPC1 479 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 TSPY2A6NKD2 308 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 TRIM6-TRIM34B2RNG4 842 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 NMT2O60551 498 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 SYN1P17600 705 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 OAZ1P54368 228 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 PPP4R3BQ5MIZ7 849 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 ANO1Q5XXA6 986 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 CPXCR1Q8N123 301 aa18.57■□□□□ 0.56
CDH3-204ENST00000565453 SENP6Q9GZR1 1112 aaPredicted RBP18.57■□□□□ 0.56
CDH3-204ENST00000565453 RAVER2Q9HCJ3 691 aaKnown RBP18.57■□□□□ 0.56
CDH3-204ENST00000565453 CCDC171Q6TFL3 1326 aa18.56■□□□□ 0.56
CDH3-204ENST00000565453 TMEM232C9JQI7 657 aa18.56■□□□□ 0.56
CDH3-204ENST00000565453 BMP8BP34820 402 aa18.56■□□□□ 0.56
CDH3-204ENST00000565453 RILPL2Q969X0 211 aa18.56■□□□□ 0.56
CDH3-204ENST00000565453 RANBP6O60518 1105 aaKnown RBP18.55■□□□□ 0.56
CDH3-204ENST00000565453 PLA2G6O60733 806 aa18.55■□□□□ 0.56
CDH3-204ENST00000565453 FDX1P10109 184 aa18.55■□□□□ 0.56
CDH3-204ENST00000565453 TAL1P17542 331 aaPredicted RBP18.55■□□□□ 0.56
CDH3-204ENST00000565453 SDSP20132 328 aa18.55■□□□□ 0.56
CDH3-204ENST00000565453 STAT2P52630 851 aa18.55■□□□□ 0.56
CDH3-204ENST00000565453 GJC2Q5T442 439 aaPredicted RBP18.55■□□□□ 0.56
CDH3-204ENST00000565453 RASGRP2Q7LDG7 609 aa18.55■□□□□ 0.56
CDH3-204ENST00000565453 FAM160B2Q86V87 743 aa18.55■□□□□ 0.56
CDH3-204ENST00000565453 ARRDC4Q8NCT1 418 aa18.55■□□□□ 0.56
CDH3-204ENST00000565453 STAG1Q8WVM7 1258 aa18.55■□□□□ 0.56
CDH3-204ENST00000565453 STX8Q9UNK0 236 aa18.55■□□□□ 0.56
CDH3-204ENST00000565453 ZNF536O15090 1300 aa18.54■□□□□ 0.56
CDH3-204ENST00000565453 ZNF865P0CJ78 1059 aaPredicted RBP18.54■□□□□ 0.56
CDH3-204ENST00000565453 MCCP23508 829 aa18.54■□□□□ 0.56
CDH3-204ENST00000565453 SLC1A4P43007 532 aa18.54■□□□□ 0.56
CDH3-204ENST00000565453 MAMDC4Q6UXC1 1216 aa18.54■□□□□ 0.56
CDH3-204ENST00000565453 MSL3Q8N5Y2 521 aaKnown RBP18.54■□□□□ 0.56
CDH3-204ENST00000565453 CHST13Q8NET6 341 aa18.54■□□□□ 0.56
CDH3-204ENST00000565453 CTDP1Q9Y5B0 961 aaPredicted RBP18.54■□□□□ 0.56
CDH3-204ENST00000565453 SUPT16HQ9Y5B9 1047 aaKnown RBP18.54■□□□□ 0.56
CDH3-204ENST00000565453 MAGEA10P43363 369 aaPredicted RBP18.53■□□□□ 0.56
CDH3-204ENST00000565453 SLC4A3P48751 1232 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 LRRC41Q15345 812 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 RCSD1Q6JBY9 416 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 KCTD1Q719H9 257 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 CHURC1Q8WUH1 139 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 CHMP4CQ96CF2 233 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 DDX11Q96FC9 970 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 FGD4Q96M96 766 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 TCP11L1Q9NUJ3 509 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 FBXO40Q9UH90 709 aa18.53■□□□□ 0.56
CDH3-204ENST00000565453 SYNGAP1Q96PV0 1343 aa18.52■□□□□ 0.56
CDH3-204ENST00000565453 KBTBD13C9JR72 458 aa18.52■□□□□ 0.56
CDH3-204ENST00000565453 SNAI1O95863 264 aaPredicted RBP18.52■□□□□ 0.56
CDH3-204ENST00000565453 ATN1P54259 1190 aaPredicted RBP18.52■□□□□ 0.56
CDH3-204ENST00000565453 HAND2P61296 217 aa18.52■□□□□ 0.56
CDH3-204ENST00000565453 ZNF467Q7Z7K2 595 aaPredicted RBP18.52■□□□□ 0.56
CDH3-204ENST00000565453 TBC1D10CQ8IV04 446 aa18.52■□□□□ 0.56
CDH3-204ENST00000565453 SMCHD1A6NHR9 2005 aa18.51■□□□□ 0.55
CDH3-204ENST00000565453 RTP1P59025 263 aa18.51■□□□□ 0.55
CDH3-204ENST00000565453 SNX17Q15036 470 aa18.51■□□□□ 0.55
CDH3-204ENST00000565453 RRP12Q5JTH9 1297 aaKnown RBP18.51■□□□□ 0.55
CDH3-204ENST00000565453 SLC39A5Q6ZMH5 540 aa18.51■□□□□ 0.55
CDH3-204ENST00000565453 AGBL1Q96MI9 1066 aa18.51■□□□□ 0.55
CDH3-204ENST00000565453 TMEM47Q9BQJ4 181 aa18.51■□□□□ 0.55
CDH3-204ENST00000565453 XPNPEP3Q9NQH7 507 aa18.51■□□□□ 0.55
CDH3-204ENST00000565453 PRR12Q9ULL5 1215 aa18.51■□□□□ 0.55
CDH3-204ENST00000565453 ISY1Q9ULR0 285 aaKnown RBP18.51■□□□□ 0.55
CDH3-204ENST00000565453 SOX1O00570 391 aaPredicted RBP18.5■□□□□ 0.55
CDH3-204ENST00000565453 RARBP10826 455 aa18.5■□□□□ 0.55
CDH3-204ENST00000565453 TOP1P11387 765 aaKnown RBP18.5■□□□□ 0.55
CDH3-204ENST00000565453 AKR1A1P14550 325 aa18.5■□□□□ 0.55
CDH3-204ENST00000565453 MFAP1P55081 439 aaKnown RBP18.5■□□□□ 0.55
CDH3-204ENST00000565453 AKNAD1Q5T1N1 836 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms