RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 USP6NLQ92738 828 aa15.78■□□□□ 0.12
CLK3-216ENST00000564468 APBA2Q99767 749 aa15.78■□□□□ 0.12
CLK3-216ENST00000564468 NBPF3Q9H094 633 aa15.78■□□□□ 0.12
CLK3-216ENST00000564468 U3KPZ7 1027 aaPredicted RBP15.78■□□□□ 0.12
CLK3-216ENST00000564468 PLXNA1Q9UIW2 1896 aa15.78■□□□□ 0.12
CLK3-216ENST00000564468 NMT2O60551 498 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 PLA2G6O60733 806 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 GJB1P08034 283 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 ZKSCAN1P17029 563 aaPredicted RBP15.77■□□□□ 0.12
CLK3-216ENST00000564468 MCCP23508 829 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 TRDNQ13061 729 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 IKQ13123 557 aaPredicted RBP15.77■□□□□ 0.12
CLK3-216ENST00000564468 GRB14Q14449 540 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 MTFR1Q15390 333 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 RCSD1Q6JBY9 416 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 RIOX2Q8IUF8 465 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 ABRAQ8N0Z2 381 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 DCAF4Q8WV16 495 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 KIFC2Q96AC6 838 aa15.77■□□□□ 0.12
CLK3-216ENST00000564468 A0A0C4DFX4 3053 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 TMEM232C9JQI7 657 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 HOXC6P09630 235 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 FCER1AP12319 257 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 CASC1Q6TDU7 716 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 CHRDL2Q6WN34 429 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 DPP9Q86TI2 863 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 DGKHQ86XP1 1220 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 HTATIP2Q9BUP3 242 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 TEX13BQ9BXU2 312 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 IL25Q9H293 177 aa15.76■□□□□ 0.11
CLK3-216ENST00000564468 ZNF214Q9UL59 606 aaPredicted RBP15.76■□□□□ 0.11
CLK3-216ENST00000564468 NEDD4P46934 1319 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 RPTORQ8N122 1335 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 ATP2A1O14983 1001 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 KDM4AO75164 1064 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 GJA8P48165 433 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 OAZ1P54368 228 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 MFSD14CQ5VZR4 134 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 REPS2Q8NFH8 660 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 TRIB2Q92519 343 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 TMEM47Q9BQJ4 181 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 UNC93B1Q9H1C4 597 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 SLC38A10Q9HBR0 1119 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 HMX1Q9NP08 348 aaPredicted RBP15.75■□□□□ 0.11
CLK3-216ENST00000564468 NR2E3Q9Y5X4 410 aa15.75■□□□□ 0.11
CLK3-216ENST00000564468 MYH6P13533 1939 aa15.74■□□□□ 0.11
CLK3-216ENST00000564468 B4E1Z4 1266 aa15.74■□□□□ 0.11
CLK3-216ENST00000564468 ADORA2AP29274 412 aa15.74■□□□□ 0.11
CLK3-216ENST00000564468 PTH1RQ03431 593 aa15.74■□□□□ 0.11
CLK3-216ENST00000564468 KCTD2Q14681 263 aa15.74■□□□□ 0.11
CLK3-216ENST00000564468 CCDC96Q2M329 555 aa15.74■□□□□ 0.11
CLK3-216ENST00000564468 SNRNP48Q6IEG0 339 aaKnown RBP15.74■□□□□ 0.11
CLK3-216ENST00000564468 MAP4K1Q92918 833 aa15.74■□□□□ 0.11
CLK3-216ENST00000564468 SGPL1O95470 568 aa15.73■□□□□ 0.11
CLK3-216ENST00000564468 KCTD1Q719H9 257 aa15.73■□□□□ 0.11
CLK3-216ENST00000564468 CPXCR1Q8N123 301 aa15.73■□□□□ 0.11
CLK3-216ENST00000564468 ZSCAN10Q96SZ4 725 aaPredicted RBP15.73■□□□□ 0.11
CLK3-216ENST00000564468 MMP19Q99542 508 aa15.73■□□□□ 0.11
CLK3-216ENST00000564468 ESYT1Q9BSJ8 1104 aa15.73■□□□□ 0.11
CLK3-216ENST00000564468 UBAC1Q9BSL1 405 aa15.73■□□□□ 0.11
CLK3-216ENST00000564468 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.73■□□□□ 0.112e-7■■■■□ 23.4
CLK3-216ENST00000564468 PAK6Q9NQU5 681 aaPredicted RBP15.73■□□□□ 0.11
CLK3-216ENST00000564468 ZSWIM5Q9P217 1185 aa15.73■□□□□ 0.11
CLK3-216ENST00000564468 FBXO40Q9UH90 709 aa15.73■□□□□ 0.11
CLK3-216ENST00000564468 MTMR7Q9Y216 660 aa15.73■□□□□ 0.11
CLK3-216ENST00000564468 CYP21A2P08686 494 aa15.72■□□□□ 0.11
CLK3-216ENST00000564468 MAP3K21Q5TCX8 1036 aa15.72■□□□□ 0.11
CLK3-216ENST00000564468 OLFML2BQ68BL8 750 aa15.72■□□□□ 0.11
CLK3-216ENST00000564468 RALYLQ86SE5 291 aaKnown RBP15.72■□□□□ 0.11
CLK3-216ENST00000564468 CHST13Q8NET6 341 aa15.72■□□□□ 0.11
CLK3-216ENST00000564468 U2AF1L4Q8WU68 220 aaKnown RBP15.72■□□□□ 0.11
CLK3-216ENST00000564468 ANKS1AQ92625 1134 aa15.72■□□□□ 0.11
CLK3-216ENST00000564468 ZKSCAN3Q9BRR0 538 aa15.72■□□□□ 0.11
CLK3-216ENST00000564468 KAT14Q9H8E8 782 aa15.72■□□□□ 0.11
CLK3-216ENST00000564468 PPP4R2Q9NY27 417 aa15.72■□□□□ 0.11
CLK3-216ENST00000564468 RBM27Q9P2N5 1060 aaKnown RBP15.72■□□□□ 0.11
CLK3-216ENST00000564468 PNMA2Q9UL42 364 aa15.72■□□□□ 0.11
CLK3-216ENST00000564468 TFRCP02786 760 aaKnown RBP15.71■□□□□ 0.11
CLK3-216ENST00000564468 PDHBP11177 359 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 PRKAR2AP13861 404 aaKnown RBP15.71■□□□□ 0.11
CLK3-216ENST00000564468 SLC4A3P48751 1232 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 CACNB2Q08289 660 aaPredicted RBP15.71■□□□□ 0.11
CLK3-216ENST00000564468 CCL14Q16627 93 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 TKFCQ3LXA3 575 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 GPATCH4Q5T3I0 446 aaKnown RBP15.71■□□□□ 0.11
CLK3-216ENST00000564468 BTNL9Q6UXG8 535 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 SLC17A8Q8NDX2 589 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 NCOA7Q8NI08 942 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 NPLOC4Q8TAT6 608 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 DDX11Q96FC9 970 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 DEFB118Q96PH6 123 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 RAVER2Q9HCJ3 691 aaKnown RBP15.71■□□□□ 0.11
CLK3-216ENST00000564468 PRR12Q9ULL5 1215 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 DIS3Q9Y2L1 958 aaKnown RBP15.71■□□□□ 0.11
CLK3-216ENST00000564468 RBM8AQ9Y5S9 174 aaKnown RBP15.71■□□□□ 0.11
CLK3-216ENST00000564468 SMCHD1A6NHR9 2005 aa15.71■□□□□ 0.11
CLK3-216ENST00000564468 TNKSO95271 1327 aa15.7■□□□□ 0.1
CLK3-216ENST00000564468 ERICH2A1L162 156 aa15.7■□□□□ 0.1
CLK3-216ENST00000564468 CDC45O75419 566 aa15.7■□□□□ 0.1
CLK3-216ENST00000564468 SNHG28P0DPA3 235 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms